1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atgattgtttctcttgtgttatcatatcggtgagcaaaaactaaagaatgaggccgcatgagatgattgtgacacagtttgttttgatttgtatttatagTCACAATGGAAAATTCAGCTACGGGTATGCTAGCTCTCCTGGCAAGAGATCTTCAATGGAAGATTTTTATGAGACAAGAATTGATGGTGTTGAAGGTGAA
species | Glycine max |
transcript | GLYMA04G06250.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGCCGGGGTCTAAG TCACAATGGAAAATTCAGCTACGGGTATGCTAGCTCTCCTGGCAAGAGATCEST: gi|193303047|gb|FK266641.1|FK266641
genomic: CGGCGGGGGTCTAAGgttaaattct ... gtatttatagTCACAATGGAAAATTCAGCTACGGGTATGCTAGCTCTCCTGGCAAGAGATC
EST: CGGCGGGGGTCTAAG TCACAATGGAAAATTCAGCTACGGGTATGCTAGCTCTCCTGGCAAGAGATCEST: gi|14999246|gb|BI320277.1|BI320277
genomic: CGGCGGGGGTCTAAGgttaaattct ... gtatttatagTCACAATGGAAAATTCAGCTACGGGTATGCTAGCTCTCCTGGCAAGAGATC
EST: AGCCAGGTTCATGTTGCAGATGATGCAATTGTGAGCGGCGGGGGTCTAAG TCACAATGGAAAATTCAGCTACGGGTATGCTAGCTCTCCTGGCAAGAGATCEST: gi|27425490|gb|CA937010.1|CA937010
genomic: AGCCAGGTTCATGTTGCAGATGATGCAATTGTGAGCGGCGGGGGTCTAAGgttaaattct ... gtatttatagTCACAATGGAAAATTCAGCTACGGGTATGCTAGCTCTCCTGGCAAGAGATC
EST: AGCCAGGTTCATGTTGCAGATGATGCAATTGTGAGCGGCGGGGGTCTAAG TCACAATGGAAAATTCAGCTACGGGTATGCTAGCTCTCCTGGCAAGAGATCEST: gi|208283169|gb|GE077361.1|GE077361
genomic: AGCCAGGTTCATGTTGCAGATGATGCAATTGTGAGCGGCGGGGGTCTAAGgttaaattct ... gtatttatagTCACAATGGAAAATTCAGCTACGGGTATGCTAGCTCTCCTGGCAAGAGATC
EST: CGGCGGGGGTCTAAG TCACAATGGAAAATTCAGCTACGGGTATGCTAGCTCTCCTGGCAAGAGATCEST: gi|23057517|gb|BU578191.1|BU578191
genomic: CGGCGGGGGTCTAAGgttaaattct ... gtatttatagTCACAATGGAAAATTCAGCTACGGGTATGCTAGCTCTCCTGGCAAGAGATC
EST: AGCCAGGTTCATGTTGCAGATGATGCAATTGTGAGCGGCGGTGGTCTAAG TCACAATGGAAAATTCAGCTACGGGTATGCTAGCTCTCCTGGCAAGAGATCEST: gi|209712192|gb|BW681398.1|BW681398
genomic: AGCCAGGTTCATGTTGCAGATGATGCAATTGTGAGCGGCGGGGGTCTAAGgttaaattct ... gtatttatagTCACAATGGAAAATTCAGCTACGGGTATGCTAGCTCTCCTGGCAAGAGATC
EST: AGCCAGGTTCATGTTGCAGATGATGCAATTGTGAGCGGCGGGGGTCTAAG TCACAATGGAAAATTCAGCTACGGGTATGCTAGCTCTCCTGGCAAGAGATCEST: gi|209722645|gb|BW654652.1|BW654652
genomic: AGCCAGGTTCATGTTGCAGATGATGCAATTGTGAGCGGCGGGGGTCTAAGgttaaattct ... gtatttatagTCACAATGGAAAATTCAGCTACGGGTATGCTAGCTCTCCTGGCAAGAGATC
EST: AGCCAGGTTCATGTTGCAGATGATGCAATTGTGAGCGGCGGGGGTCTAAG TCACAATGGAAAATTCAGCTACGGGTATGCTAGCTCTCCTGGCAAGAGATCEST: gi|213618457|gb|DB969399.1|DB969399
genomic: AGCCAGGTTCATGTTGCAGATGATGCAATTGTGAGCGGCGGGGGTCTAAGgttaaattct ... gtatttatagTCACAATGGAAAATTCAGCTACGGGTATGCTAGCTCTCCTGGCAAGAGATC
EST: AGCCAGGTTCATGTTGCAGATGATGCAATTGTGAGCGGCGGGGGTCTAAG TCACAATGGAAAATTCAGCTACGGGTATGCTAGCTCTCCTGGCAAGAGATC
genomic: AGCCAGGTTCATGTTGCAGATGATGCAATTGTGAGCGGCGGGGGTCTAAGgttaaattct ... gtatttatagTCACAATGGAAAATTCAGCTACGGGTATGCTAGCTCTCCTGGCAAGAGATC
gaatgaggccgcatgagatgattgtgacacagtttgttttgatttgtatttatagTCACAATGGAAAATTCAGCTACGGGTATGCTAGCTCTCCTGGCAAGAGATCTTCAATGGAAGATTTTTATGAGACAAGAATTGATGGTGTTGAAGGTGAA
ttttgat putative branch site (score: 4)
tttgttttgatttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgattgtttctcttgtgttatcatatcggtgagcaaaaactaaagaatgaggccgcatgagatgattgtgacacagtttgttttgatttgtatttatagTCACAATGGAAAATTCAGCTACGGGTATGCTAGCTCTCCTGGCAAGAGATCTTCAATGGAAGATTTTTATGAGACAAGAATTGATGGTGTTGAAGGTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - -tcttgtg
- - - - - - - - - - - - - - - - - caaaaac
- - - - - - - - - - - - - - - - - - - - - - -gaatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacaca