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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacactctctttcttcaatgtacctggacatagtgaaatctaaacaaattgtttgttgttagtgattttaatgtcaattgtgttgttgaaagtgatttttagtggatatgatattggattgggtgttgttttttttatttggtgtggttaaattcggtgtttatttttcttagGAAGCTGAGCTTGCTAAGGAGAAGACTCATGGGTACAAATTGGACCGGGCACACATATTTGCCGTGAGCATGTTTGATGACTTTGACAGATTCATGAAGG

Basic information

species Glycine max
transcript GLYMA04G06080.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G06080.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os10g41960.1 (Oryza sativa), 3'ss of exon 2
gtatacactctctttcttcaatgtacctggacatagtgaaatctaaacaaattgtttgttgttagtgattttaatgtcaattgtgttgttgaaagtgatttttagtggatatgatattggattgggtgttgttttttttatttggtgtggttaaattcggtgtttatttttcttagGAAGCTGAGCTTGCTAAGGAGAAGACTCATGGGTACAAATTGGACCGGGCACACATATTTGCCGTGAGCATGTTTGATGACTTTGACAGATTCATGAAGG
                                                                   ||   ||  | ||      ||| | | ||    |||  |   |    | ||   |   ||   ||||     | || || |   |   || |   ||      | | |||||||||||||||||| ||| |||||  ||||||||||  | |||  | | ||||| ||||| || | ||||||||||||||||||||  | |||||| |
------------------------------------------------------------------aataggaaattgaacgactctgtcggatgtttcgtttt-tatgttcatttttaagtctagtagggttta----agtttgtattactttgtttgacatta-----tgtcagGAAGCTGAGCTTGCTAGGGAAAAGACAAATGGGTACAAGCTCGACAAGTCTCACATCTTTGCAGTTAACATGTTTGATGACTTTGACAAGTACATGAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgggtgttgttttttttatttggtgtggttaaattcggtgtttatttttcttagGAAGCTGAGCTTGCTAAGGAGAAGACTCATGGGTACAAATTGGACCGGGCACACATATTTGCCGTGAGCATGTTTGATGACTTTGACAGATTCATGAAGG
                                       tgtttatttttctt  CT-rich tract
     tgttgttttttttatt  TA-rich tract