Sequence
atgc intronic sequence ATGC exonic sequencegtattatttcataaggcttcattgtttttttgttgatatttgtcgtttgataatttctgtgattgtaattgatgtagAATATTGGATGGTTCTATATGCAGCAGCGAAGATGGTAATACTAGTTGAAGAAGTGGTCGACAGATATTGCCTCATTATCCGTATCCTTTGTAAAGAATA
Basic information
species | Glycine max |
transcript | GLYMA04G05500.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209705787|gb|BW661455.1|BW661455EST: TTTCATTATCTGGGGGGTTCAGATAAAACTTTCCCCTTTGAACCGTGGTG AATATTGGATGGTTCTATATGCAGCAGCGAAGATGGTAATACTAGTTGAAG
genomic: TTTCATTATCTAGGGGGTTCAGATAAAACTTTCCCCTTTGAACCGTGGTGgtattatttc ... attgatgtagAATATTGGATGGTTCTATATGCAGCAGCGAAGATGGTAATACTAGTTGAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtttttttgttgatatttgtcgtttgataatttctgtgattgtaattgatgtagAATATTGGATGGTTCTATATGCAGCAGCGAAGATGGTAATACTAGTTGAAGAAGTGGTCGACAGATATTGCCTCATTATCCGTATCCTTTGTAAAGAATA
aattgat putative branch site (score: 4)
ttttgttgatattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattatttcataaggcttcattgtttttttgttgatatttgtcgtttgataatttctgtgattgtaattgatgtagAATATTGGATGGTTCTATATGCAGCAGCGAAGATGGTAATACTAGTTGAAGAAGTGGTCGACAGATATTGCCTCATTATCCGTATCCTTTGTAAAGAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA