Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactttggctattgccacatgtgacatacagatgcaggcactcacatgtacatgaatttatagcttaagttcactcacatgaaatttttccctaatcgatatttatttgggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA

Basic information

species Glycine max
transcript GLYMA04G04170.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193466718|gb|FK433455.1|FK433455
EST:     CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAG                         GCAGAAATTATGGAAATTCAGAAAAATCAA
genomic: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttgg ... ggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA
EST: gi|207830846|gb|GD803742.1|GD803742
EST:     CAGAAGTTGCTAAGTTAAAAGNGGAGAACCAAGAACTTCAGAAAAAACAG                         GCAGAAATTATGGAAATTCAGAAAAATCAA
genomic: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttgg ... ggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA
EST: gi|193548975|gb|FK505382.1|FK505382
EST:     CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACNG                         GCAGAAATTATGGAAATTCAGAAAAATCAA
genomic: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttgg ... ggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA
EST: gi|207750222|gb|GD723390.1|GD723390
EST:     CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAG                         GCAGAAATTATGGAAATTCAGAAAAATCAA
genomic: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttgg ... ggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA
EST: gi|193334383|gb|FK297585.1|FK297585
EST:     CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAA-CAG                         GCAGAAATTAT
genomic: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttgg ... ggtactgcagGCAGAAATTAT
EST: gi|208241024|gb|GE039574.1|GE039574
EST:     CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAG                         GCAGAAATTATGGAAATTCAGAAAAATCAA
genomic: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttgg ... ggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA
EST: gi|193409385|gb|FK370407.1|FK370407
EST:     CAGAAGTTGCAAAGTTAAAAGAGGAGAACGAAGAACTTCAGAAAAAACAG                         GCAGAAATTATGGAAATTCAGAAAAATCAA
genomic: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttgg ... ggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA
EST: gi|193313919|gb|FK281652.1|FK281652
EST:     CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAA-CAG                         GCAGAAATTATGGAAATTC
genomic: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttgg ... ggtactgcagGCAGAAATTATGGAAATTC
EST: gi|208156795|gb|GD955075.1|GD955075
EST:     CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAG                         GCAGAAATTATGGAAATTCAGAAAAATCAA
genomic: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttgg ... ggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA
EST: gi|193680024|gb|FK625260.1|FK625260
EST:     CAGAAGTTGCTAAGTTAA--GAGGAGAACCAAGAACTTCAGAAAAAACAG                         GCAGAAATTATGGAAATTCAGAAAA-TCAA
genomic: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttgg ... ggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA
EST: gi|10237462|gb|BE806350.1|BE806350
EST:     CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAG                         GCAGAAATTATGGAAATTCAGAAAAATCAA
genomic: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttgg ... ggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA
EST: gi|207835788|gb|GD806513.1|GD806513
EST:     CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAG                         GCAGAAATTATGGAAATTCAGAAAAANCAA
genomic: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttgg ... ggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaagttcactcacatgaaatttttccctaatcgatatttatttgggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA
                            taatcgatatttattt  TA-rich tract