1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaccagcacacaatgtatgtaattcattctatcatattatagtatgacataacaagttaatggatttgctctgtgtactagTGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTCTCAAATGCTGTCAAAGTTCAG
species | Glycine max |
transcript | GLYMA04G03290.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAG TGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTCEST: gi|15814578|gb|BI786853.1|BI786853
genomic: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAGgtaccagcac ... tgtgtactagTGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTC
EST: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAG TGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTCEST: gi|7795143|gb|AW780540.1|AW780540
genomic: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAGgtaccagcac ... tgtgtactagTGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTC
EST: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAG AGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTCEST: gi|192334033|gb|FK026190.1|FK026190
genomic: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAGgtaccagcac ... tgtgtactagTGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTC
EST: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAG TGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTCEST: gi|298173637|gb|HO016973.1|HO016973
genomic: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAGgtaccagcac ... tgtgtactagTGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTC
EST: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAG TGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTCEST: gi|209706384|gb|BW670787.1|BW670787
genomic: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAGgtaccagcac ... tgtgtactagTGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTC
EST: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAG TGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTCEST: gi|298179451|gb|HO027922.1|HO027922
genomic: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAGgtaccagcac ... tgtgtactagTGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTC
EST: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAG TGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTCEST: gi|16348682|gb|BI974268.1|BI974268
genomic: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAGgtaccagcac ... tgtgtactagTGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTC
EST: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAG TGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTCEST: gi|298186858|gb|HO033957.1|HO033957
genomic: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAGgtaccagcac ... tgtgtactagTGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTC
EST: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAG TGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTCEST: gi|192323065|gb|FK016316.1|FK016316
genomic: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAGgtaccagcac ... tgtgtactagTGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTC
EST: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAG TGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTCEST: gi|192326921|gb|FK015148.1|FK015148
genomic: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAGgtaccagcac ... tgtgtactagTGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTC
EST: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAG TGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTCEST: gi|16996508|gb|BM085880.1|BM085880
genomic: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAGgtaccagcac ... tgtgtactagTGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTC
EST: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAG TGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTCEST: gi|298173676|gb|HO017012.1|HO017012
genomic: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAGgtaccagcac ... tgtgtactagTGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTC
EST: ACTCTGTCGACCTCTCAGGACTCCGTCAAAAGAAAGGACACACTGCACAG TGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTCEST: gi|41145774|gb|CK605985.1|CK605985
genomic: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAGgtaccagcac ... tgtgtactagTGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTC
EST: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAG TGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTCEST: gi|298185496|gb|HO030709.1|HO030709
genomic: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAGgtaccagcac ... tgtgtactagTGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTC
EST: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAG TGTGTTTGCTTGGEST: gi|7691339|gb|AW759397.1|AW759397
genomic: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAGgtaccagcac ... tgtgtactagTGTGTTTGCTTGG
EST: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAG TGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCG
genomic: ACTCTGTCGACCTCTCAAGACTCCGTCAAAAGAAAGGACACACTGCACAGgtaccagcac ... tgtgtactagTGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCG
ttctatcatattatagtatgacataacaagttaatggatttgctctgtgtactagTGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTCTCAAATGCTGTCAAAGTTCAG
tttgctct CT-rich tract
tcatattatagtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccagcacacaatgtatgtaattcattctatcatattatagtatgacataacaagttaatggatttgctctgtgtactagTGTGTTTGCTTGGTAGATGACATGGGTAACCGTACAATGCGGCCCTGTCTCTCAAATGCTGTCAAAGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG