1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgggaggaatttttatctgctccagagatgtgatcaatcattatgaaagaaaaatgagcactttttgcttacctttttttttgtgttgaaaaaattgtagGACATACTTGATCTTGCAAAATATGCAACTGTGCCAGTCATCAATGGGTTGACAGACTACAACCATCCCTGCCAGATAATGGCTGATGCCCTTACCATGG
species | Glycine max |
transcript | GLYMA04G03280.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTTGTCTCGCTATAATGACATCATTATGGCTCGTGTNTTTGCTCATAAG GACATACTTGATCTTGCAAAEST: gi|26058799|gb|CA801713.1|CA801713
genomic: TTTTGTCTCGCTATAATGACATCATTATGGCTCGTGTTTTTGCTCATAAGgtatgctggt ... aaaattgtagGACATACTTGATCTTGCAAA
EST: TTTTGTCTCGCTATAATGACATCATTATGGCTCGTGTTTTTGCTCATAAG GACATACTTGATCTTGCAAAATATGCAACTGTGCCAGTCATCAATGGGTTGEST: gi|6455284|gb|AW185967.1|AW185967
genomic: TTTTGTCTCGCTATAATGACATCATTATGGCTCGTGTTTTTGCTCATAAGgtatgctggt ... aaaattgtagGACATACTTGATCTTGCAAAATATGCAACTGTGCCAGTCATCAATGGGTTG
EST: TTTTGTCTCGCTATAATGACATCATTATGGCTCGTGTNTTTGCTCATAAG GACATACTTGATCTTGCAAAATATGCAACTGTGCCAGTCATCAATGGGTTG
genomic: TTTTGTCTCGCTATAATGACATCATTATGGCTCGTGTTTTTGCTCATAAGgtatgctggt ... aaaattgtagGACATACTTGATCTTGCAAAATATGCAACTGTGCCAGTCATCAATGGGTTG
aaagaaaaatgagcactttttgcttacctttttttttgtgttgaaaaaattgtagGACATACTTGATCTTGCAAAATATGCAACTGTGCCAGTCATCAATGGGTTGACAGACTACAACCATCCCTGCCAGATAATGGCTGATGCCCTTACCATGG
tgcttac putative branch site (score: 2)
tttttttttgtgttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggaggaatttttatctgctccagagatgtgatcaatcattatgaaagaaaaatgagcactttttgcttacctttttttttgtgttgaaaaaattgtagGACATACTTGATCTTGCAAAATATGCAACTGTGCCAGTCATCAATGGGTTGACAGACTACAACCATCCCTGCCAGATAATGGCTGATGCCCTTACCATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
-gggagga
- - - - - - - - -tgctcca
- - - - - - - - - - - - - - - - - - - - - - - aagaaaa