1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctgagatctgagatctctatttcgtacaacgattatttcagatttgtgcgttctactatttcgtggtttttgattctatttatttttctacgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGGAAAGGGGAAGGCAGCGAAAGATCCTAACAAGCCAAAGAGGCCTCCAAGT
species | Glycine max |
transcript | GLYMA04G01840.7 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAAGGAAACCCGEST: gi|193340893|gb|FK307170.1|FK307170
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTA-GGAAACCCG
EST: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGGEST: gi|208240700|gb|GE037248.1|GE037248
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAEST: gi|193546645|gb|FK503648.1|FK503648
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCA
EST: AGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAG ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGGEST: gi|193434275|gb|FK399321.1|FK399321
genomic: AGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGGEST: gi|193592416|gb|FK545634.1|FK545634
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGGEST: gi|208119912|gb|GD919763.1|GD919763
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: GAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA ACTTGCTGTGAATAAGAAGGGEST: gi|193629203|gb|FK578151.1|FK578151
genomic: GAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGG
EST: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGGEST: gi|193621980|gb|FK569216.1|FK569216
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: AGCCGATGCCAA ACTTGCTGTGAATAANAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGGEST: gi|207832519|gb|GD802663.1|GD802663
genomic: AGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: AGAGCCGATGCCAA ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGGEST: gi|207785780|gb|GD757879.1|GD757879
genomic: AGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAAAGCCGATGCCAA ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGGEST: gi|207690945|gb|GD671567.1|GD671567
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGGEST: gi|193535155|gb|FK491699.1|FK491699
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: TCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGGEST: gi|208196615|gb|GD994910.1|GD994910
genomic: TCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: TGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGGEST: gi|208205358|gb|GE004089.1|GE004089
genomic: TGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: AGGAGAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGGEST: gi|207763040|gb|GD731171.1|GD731171
genomic: AGGA-AAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: AAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGGEST: gi|193455897|gb|FK417018.1|FK417018
genomic: AAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: TGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGGEST: gi|10233700|gb|BE802588.1|BE802588
genomic: TGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAATACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
gtgcgttctactatttcgtggtttttgattctatttatttttctacgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGGAAAGGGGAAGGCAGCGAAAGATCCTAACAAGCCAAAGAGGCCTCCAAGT
ttttgat putative branch site (score: 4)
tttttctac putative PPT
tttttgattctattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgagatctgagatctctatttcgtacaacgattatttcagatttgtgcgttctactatttcgtggtttttgattctatttatttttctacgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGGAAAGGGGAAGGCAGCGAAAGATCCTAACAAGCCAAAGAGGCCTCCAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG