Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgagatctgagatctctatttcgtacaacgattatttcagatttgtgcgttctactatttcgtggtttttgattctatttatttttctacgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGGAAAGGGGAAGGCAGCGAAAGATCCTAACAAGCCAAAGAGGCCTCCAAGT

Basic information

species Glycine max
transcript GLYMA04G01840.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208329120|gb|GE128416.1|GE128416
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAAGGAAACCCG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTA-GGAAACCCG
EST: gi|15286929|gb|BI470820.1|BI470820
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|298177433|gb|HO023566.1|HO023566
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|298166994|gb|HO010433.1|HO010433
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|298194732|gb|HO043204.1|HO043204
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|298182978|gb|HO028241.1|HO028241
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|193340893|gb|FK307170.1|FK307170
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|6719385|gb|AW307032.1|AW307032
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|9204976|gb|BE331200.1|BE331200
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|4313697|gb|AI460816.1|AI460816
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|10847152|gb|BF069891.1|BF069891
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|7691340|gb|AW759398.1|AW759398
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|15287780|gb|BI471671.1|BI471671
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|11688737|gb|BF596413.1|BF596413
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|5760619|gb|AI965982.1|AI965982
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|8669419|gb|BE190526.1|BE190526
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAAACTAGGAAACCCGCCTG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|13240357|gb|BG359666.1|BG359666
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCCA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|22523779|gb|BU082590.1|BU082590
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|11413010|gb|BF425030.1|BF425030
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAANACCCGCCG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAA-ACCCGCCG
EST: gi|7693251|gb|AW761346.1|AW761346
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|18040463|gb|BM308757.1|BM308757
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|27426168|gb|CA937688.1|CA937688
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|7693215|gb|AW761311.1|AW761311
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCCCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|9204325|gb|BE330549.1|BE330549
EST:     GAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCTCCGG
genomic: GAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|7285599|gb|AW598086.1|AW598086
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|8283940|gb|BE021499.1|BE021499
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|7795256|gb|AW780653.1|AW780653
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|298174909|gb|HO014826.1|HO014826
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|6566916|gb|AW234548.1|AW234548
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|208240700|gb|GE037248.1|GE037248
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCA
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCA
EST: gi|193546645|gb|FK503648.1|FK503648
EST:     AGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAG                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: AGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|19348267|gb|BM892799.1|BM892799
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|4290670|gb|AI437510.1|AI437510
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|193434275|gb|FK399321.1|FK399321
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|15814324|gb|BI786599.1|BI786599
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|19937168|gb|BQ081178.1|BQ081178
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|9439725|gb|BE440240.1|BE440240
EST:     TGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAACCCCGCCGG
genomic: TGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|298169819|gb|HO018443.1|HO018443
EST:     ATCATGAAAGGAGGAAAGTCCAAGGCCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|193592416|gb|FK545634.1|FK545634
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|207763040|gb|GD731171.1|GD731171
EST:     AAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: AAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|4313668|gb|AI460787.1|AI460787
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|11413358|gb|BF425369.1|BF425369
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|4396967|gb|AI495964.1|AI495964
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|207832519|gb|GD802663.1|GD802663
EST:     AGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: AGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|21602272|gb|BQ612612.1|BQ612612
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|254326788|gb|GR836397.1|GR836397
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|208119912|gb|GD919763.1|GD919763
EST:     GAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATCCCAA                         ACTTGCTGTGAATAAGAAGGG
genomic: GAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGG
EST: gi|7283486|gb|AW596093.1|AW596093
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|193629203|gb|FK578151.1|FK578151
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|6481452|gb|AW200723.1|AW200723
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|16347525|gb|BI973120.1|BI973120
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|9565316|gb|BE474825.1|BE474825
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|11687730|gb|BF595406.1|BF595406
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|298194939|gb|HO043411.1|HO043411
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|7041959|gb|AW471853.1|AW471853
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|13312516|gb|BG406167.1|BG406167
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|20207566|gb|BQ133655.1|BQ133655
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|298197229|gb|HO041972.1|HO041972
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|192328172|gb|FK022866.1|FK022866
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTACTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|298189527|gb|HO037930.1|HO037930
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|207785780|gb|GD757879.1|GD757879
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAAAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|14259807|gb|BG882715.1|BG882715
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|207690945|gb|GD671567.1|GD671567
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|19346952|gb|BM891832.1|BM891832
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|298190508|gb|HO032629.1|HO032629
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|15199758|gb|BI423995.1|BI423995
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|193535155|gb|FK491699.1|FK491699
EST:     TCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: TCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|208196615|gb|GD994910.1|GD994910
EST:     TGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: TGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|298197186|gb|HO041929.1|HO041929
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAGCCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|208205358|gb|GE004089.1|GE004089
EST:     AGGAGAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: AGGA-AAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|308098052|gb|HO761223.1|HO761223
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|10842858|gb|BF066207.1|BF066207
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|193621980|gb|FK569216.1|FK569216
EST:     AGCCGATGCCAA                         ACTTGCTGTGAATAANAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: AGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|4396479|gb|AI495476.1|AI495476
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|14258761|gb|BG881669.1|BG881669
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|193455897|gb|FK417018.1|FK417018
EST:     TGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
genomic: TGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG
EST: gi|10233700|gb|BE802588.1|BE802588
EST:     ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAA                         ACTTGCTGTGAATAAGAAGGGCGCCGCCACCAATACTAGGAAACCCGCCGG
genomic: ATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAgtaagtttca ... cgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcgttctactatttcgtggtttttgattctatttatttttctacgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGGAAAGGGGAAGGCAGCGAAAGATCCTAACAAGCCAAAGAGGCCTCCAAGT
                      ttttgat  putative branch site (score: 4)
                                     tttttctac  putative PPT
                     tttttgattctattta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctgagatctgagatctctatttcgtacaacgattatttcagatttgtgcgttctactatttcgtggtttttgattctatttatttttctacgaatctcagACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGGAAAGGGGAAGGCAGCGAAAGATCCTAACAAGCCAAAGAGGCCTCCAAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - tgcgttc