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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatattctgtttgcatgccatacattactgtaattcttttcatttaatgttctttctaatgaagaaacttttgctgactattcagGATGCTTGTTTATGAATATGTTGACAATGGAACATTGGAACAGTGGCTGCATGGTGATGTAGGACCTGCTAGCCCCTTGACATGGGATATAAGAATGAAG

Basic information

species Glycine max
transcript GLYMA04G01440.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G01440.1 (Glycine max), 3'ss of exon 2
lower sequence: AT4G34500.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaaaatattctgtttgcatgcca-tacattactgtaattcttttcatttaatgttctttctaatgaagaaacttttgctgactattcagGATGCTTGTTTATGAATATGTTGACAATGGAACATTGGAACAGTGGCTGCATGGTGATGTAGGACCTGCTAGCCCCTTGACATGGGATATAAGAATGAAG
      || ||       |  | | |  |||| |  || |||  |     | |  |||  |   |         |||| |   |  | ||||||||||| ||||||||| |||| |||||||  ||||| |||||| | || ||||||||||| || |  || ||  | || ||||||||  | ||||||
--gtgctaatccaaacaaactcaaatgaattagta-aactctaatttggaattaatctaacagttagttctttctttgttccttgattagGATGCTTGTGTATGAATATATTGATAATGGAAACTTGGAGCAGTGGTTACACGGTGATGTAGGTCCGGTGAGTCCTCTTACGTGGGATATCCGCATGAAG

upper sequence: GLYMA04G01440.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv03s0063g02510.t01 (Vitis vinifera), 3'ss of exon 2
---------------------gtaaaatattctgtttgcatgccatacattactgta-attcttttcatttaatgttctttctaatgaagaaacttttgctgactattcagGATGCTTGTTTATGAATATGTTGACAATGGAACATTGGAACAGTGGCTGCATGGTGATGTAGGACCTGCTAGCCCCTTGACATGGGATATAAGAATGAAG
                     ||    || |    |    ||    | || |   || || | |    || | ||     || |   |  | | ||   ||| ||   ||||||||||||||||||||||||||||||||| |  ||||| |||||| |||||||||||||||| ||||  || ||  | |||||||||||  | ||||||
gtaggccttattatccacttggttctgtaattgaatgttttgatgaatatgagaatagatacgtccttttcactgcctaatccatccattacatttccactggctgaacagGATGCTTGTTTATGAATATGTTGACAATGGCAATTTGGAGCAGTGGTTGCATGGTGATGTAGGGCCTGTCAGTCCTCTAACATGGGATATTCGGATGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattcttttcatttaatgttctttctaatgaagaaacttttgctgactattcagGATGCTTGTTTATGAATATGTTGACAATGGAACATTGGAACAGTGGCTGCATGGTGATGTAGGACCTGCTAGCCCCTTGACATGGGATATAAGAATGAAG
                                         tgctgac  putative branch site (score: 2)
      ttttcatttaatgtt  TA-rich tract