1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagtagtaacctttttttttttttttgttctttctttctcttcaatgcatttctctctctagattttgcttctaggatagtaaagtaatcattctatttcggtgtttatgcagGTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTACCCGGTTGCAACAAAGTCACGGGAAAAGCTGGAATGCTTGATGAAATCA
species | Glycine max |
transcript | GLYMA04G01400.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGA GTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTAEST: gi|33389906|gb|CA853113.1|CA853113
genomic: TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGAgtgagtagta ... gtttatgcagGTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTA
EST: TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGA GTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTAEST: gi|22522891|gb|BU081702.1|BU081702
genomic: TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGAgtgagtagta ... gtttatgcagGTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTA
EST: TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGA GTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTAEST: gi|13125350|gb|BG315920.1|BG315920
genomic: TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGAgtgagtagta ... gtttatgcagGTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTA
EST: TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGA GTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTAEST: gi|10847455|gb|BF071548.1|BF071548
genomic: TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGAgtgagtagta ... gtttatgcagGTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTA
EST: TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGA GTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTAEST: gi|19348569|gb|BM893101.1|BM893101
genomic: TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGAgtgagtagta ... gtttatgcagGTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTA
EST: TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGA GTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTAEST: gi|13180919|gb|BG352259.1|BG352259
genomic: TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGAgtgagtagta ... gtttatgcagGTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTA
EST: TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGA GTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTA
genomic: TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGAgtgagtagta ... gtttatgcagGTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTA
ctagattttgcttctaggatagtaaagtaatcattctatttcggtgtttatgcagGTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTACCCGGTTGCAACAAAGTCACGGGAAAAGCTGGAATGCTTGATGAAATCA
taatcattctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtagtaacctttttttttttttttgttctttctttctcttcaatgcatttctctctctagattttgcttctaggatagtaaagtaatcattctatttcggtgtttatgcagGTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTACCCGGTTGCAACAAAGTCACGGGAAAAGCTGGAATGCTTGATGAAATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA