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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaacatatatctttttgcctttactagcatgcatttgttgtgaatttgacggtggattttccttttacaataatactgattaatcaatctgcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAAGCTCTTGCCCTTTATGGTCTAATCGTTGGTATTATCCTG

Basic information

species Glycine max
transcript GLYMA04G00950.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G00950.2 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os11g06890.1 (Oryza sativa), 3'ss of exon 2
-gaacatatatctttttgcctttactagcatgcatttgttgtgaatttgacggtggattttccttttacaataatactgat-taatcaatctgcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAAGCTCTTGCCCTTTATGGTCTAATCGTTGGTATTATCCTG
      | |   |   | || ||  |     |   |||  |  | |   | | ||    | | ||  |  | ||| ||||| |      |  |  |  |||| || ||||||||||| ||||| ||||| || || ||||| |||||||||||||| || ||||| |||||||| |||||||| || || || || ||||| 
cctcggtgttcatgactaccctttgtgttgagagcttgaggctactcctaagctg--cctactttggattacaattctgatatctcttgttggtgttggcagGGCAAATGCACAGCAACCAAAGCTTTTCGTGGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCCCTGTATGGTCTCATTGTGGGCATCATCCTC

upper sequence: GLYMA04G00950.2 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 2
gaacatatatctttttgcctttactagcatgcatttgttgtgaatttgacggtggattttccttttacaataatactga---ttaatcaatctgcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAAGCTCTTGCCCTTTATGGTCTAATCGTTGGTATTATCCTG
 || |||     |   |  | |       ||    | |||| | |    |  |    ||| |    | | | | | |      |  |  | || | ||||||| |||||||| |||||||||||  | || || || ||||| |||||||| || ||||| ||||||||||| || ||||| || || |||||||| ||||| 
-aaaatagcagatagagtttctttctatctgttactattgtaagtaaagcactcttgtttgcaggaa-attgacatttggttctggtttacct-cctctgcagGGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTATCTTTGCAGAAGCTCTTGCTCTGTATGGCCTGATTGTTGGTATCATCCTC

upper sequence: GLYMA04G00950.2 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os02g34510.1 (Oryza sativa), 3'ss of exon 1
-gaacatatatctttttgc--ctttactagcat-gcatttgttgtgaatttgacggtggattttccttttacaataatactgattaatcaatctgcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAAGCTCTTGCCCTTTATGGTCTAATCGTTGGTATTATCCTG
    |||    |||| |||  ||| | | | |   ||    || ||| ||| | | |    || | |  | |  |  |      ||||| |  |       ||| || ||||| || ||||||||||| ||||| || ||||| |||||||| || ||||| ||||| ||||| || |||||||| || |||||||| ||| ||
atttcatgacactttgtgcagcttgattggaaccacaggaattttgatttttatgct----ttgcttggtgcgctgttctaacataatctacttttgctctcagGGCAAATGCTCAACAGCCAAAACTGTTTGTGGGTATGATCCTCATCCTTATCTTTGCGGAAGCGCTTGCACTCTATGGTCTCATTGTTGGTATCATCTTG

upper sequence: GLYMA04G00950.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
gaacatatatctttttgcctt-tactagcatg-catttgttgtgaatttgacggtggattttccttttacaataatactgattaatcaatctgcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAAGCTCTTGCCCTTTATGGTCTAATCGTTGGTATTATCCTG
 |  |  |  | |    | || | || || |  | | | ||    |   | |   ||| ||    |||  | |   ||| |||  |    |  |   | ||| || ||||| || |||||||| ||||| ||||| ||||| |||||||||||||| || ||||| ||||| || ||||||||||| ||||| |||||||| 
-agtagctcacatgcaactttctcctggcgtttcttcttttacagaggaggcatgggaattgaaattt-tagtttgactaatttttgggccaccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT

upper sequence: GLYMA04G00950.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 2
---gaacatatatctttttgc-----ctttactagcatgcatttgttgtgaatttgacggtggattttccttttacaataatactgattaatcaatctgcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAAGCTCTTGCCCTTTATGGTCTAATCGTTGGTATTATCCTG
    || |  | || |  | |      | || || ||         |||  | |  |    | |   ||  |      ||| |||  ||  |        || ||||| || || || |||||||| ||  | |||||||| ||||| |||||||| |||||||||||||| |||||||| |||||||| ||||| || |||||||| 
ttcaaagagttgtcctagttcgaaaattatattatcaactggaacctgtctactctagaccgcaacatctctccgtcctaacacttgttctt--------ttgtgcagGGCGAACGCTCAGCAGCCGAAGTTGTTTGTTGGCATGATCCTCATCCTTATTTTTGCTGAAGCACTTGCCCTCTATGGTCTCATCGTCGGCATTATCCTC

upper sequence: GLYMA04G00950.2 (Glycine max), 3'ss of exon 1
lower sequence: AC216067.3_FGT002 (Zea mays), 3'ss of exon 2
-gaacatatatctttt--tgcctttactagcatgcatttgttgtgaatttgacggtggattttccttttacaataatactgattaatcaatctgcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAAGCTCTTGCCCTTTATGGTCTAATCGTTGGTATTATCCTG
  | |   | |||||    |  | | ||   | | |     |      ||    | | |||    |||||      || |   |   | |     |||   || || |||||||| ||||| || |||||||| || ||||| |||||||||||||| || ||||| ||||| || || ||||| || ||||| |||||||| 
taatctcctttctttgagcgtttcttcttttaaggaggcagtacatgcttatttgggaattgaaattttattgacttattttctgggccactgatttc---agGGCGAATGCACAACAGCCGAAGCTTTTTGTGGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTGTACGGTCTCATTGTTGGAATTATCCTT

upper sequence: GLYMA04G00950.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G028432_T01 (Zea mays), 3'ss of exon 1
gaacatatatctttttgcctttactagcatgcatttgttgtgaatttgac-ggtggattttccttttacaa----taatactgattaatcaatctgcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAAGCTCTTGCCCTTTATGGTCTAATCGTTGGTATTATCCTG
   ||  ||     ||| | |   | | |        |||| ||   | | ||  |  |   |    |||     | || ||||   |    |    ||  |||| || || || ||||||||||| || ||||| || ||||| ||||||||||| || |||||||| || ||||| || ||||| ||||| || || ||||| 
---cacttaaacacttgtcctacttgggaaaatcggattgtcaaccgggctggctgcctagacggcgacatctcctcatcctgac--acttgttcttttgcgcagGGCGAACGCTCAGCAGCCAAAGCTGTTTGTGGGCATGATCCTCATCCTCATCTTCGCTGAAGCGCTCGCCCTATACGGTCTCATCGTCGGCATCATCCTC

upper sequence: GLYMA04G00950.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM5G893252_T01 (Zea mays), 3'ss of exon 2
------gaacatatatctttttgcctttactagcatgcatttgttgtgaatttgacggtggattttccttttacaataatactgattaatcaatctgcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAAGCTCTTGCCCTTTATGGTCTAATCGTTGGTATTATCCTG
        |||   |  |||||||   |   | | |  | || |    |    |  |      | || || |    |||| |||||| ||       | ||| ||| || |||||||||||||||||  | ||||| || |||||||| ||||| || || || ||||||||||| || || ||||| ||||| ||||| || || 
tctcttatacagccaaatttttgcacct-taaacctcaaattatatccagcccgttgtcaacatgtcattcttatctaattctgatttatgt-----cgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTATCTTCGCAGAAGCTCTTGCTCTGTACGGTCTCATCGTCGGTATCATTCTC

upper sequence: GLYMA04G00950.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv03s0038g00790.t01 (Vitis vinifera), 3'ss of exon 2
gaacatatatctttttgcctttactagcatgcatttgttgtgaatttgacggtggattttccttttacaataatactgattaatc-aatctgc------ttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAAGCTCTTGCCCTTTATGGTCTAATCGTTGGTATTATCCTG
       | |  ||| | |     ||| ||  | ||| | ||    ||| |    ||| |   ||   |  | || | || | |  |||||        || ||||| || ||||| |||||||| |||||||||||||| ||||| ||||| ||||| ||||||||||| || ||||| || || || || ||||| |||||| ||
----gactgtactttggacgactttaggata-agttgctttgg--ctgaggacaaattctttgttagtaggactaatcataatttgaatctatgatttgttttgcagGGCTAATGCGCAGCAGCCTAAACTTTTTGTTGGTATGATCCTCATTCTCATCTTTGCTGAAGCACTGGCCCTATACGGCCTTATTGTTGGCATTATCTTG

upper sequence: GLYMA04G00950.2 (Glycine max), 3'ss of exon 1
lower sequence: PP1S2_120V6.1 (Physcomitrella patens), 3'ss of exon 2
------------------------------------------------------------gaacatatatctttttgcctttactagcatgcatttg--ttgtgaatt------tgacggtggattttccttttacaataat---actgattaatcaatctgcttctgc--agAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAAGCTCTTGCCCTTTATGGTCTAATCGTTGGTATTATCCTG
                                                             | | | | ||||||   |  | | |      |  ||  || || ||       |  |  |||    | | |  ||     |   || |     |  || |  || |||  ||||||||||| |||||||| || ||||| || ||||||||  | || |||||||| ||||| ||||||||| | || || || || || || || ||  ||
gtaataattcaagatctgagcacatctataagaaatgtgtaacacataggttgaatggtgaatcttgtctcttttcttcgattcaaattcagagctgacttttggatcataacctaccattggtaaatacatgcacgggggtttgaccggagggtttatttttttgtgcgcagAGCCAATGCCCAGCAGCCGAAGCTTTTCGTGGGAATGATCTTGATTCTCATTTTCGCTGAGGCTCTTGCCTTATACGGGCTGATTGTGGGCATCATTTTG

upper sequence: GLYMA04G00950.2 (Glycine max), 3'ss of exon 1
lower sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 2
gaacatatatctttttgcctttactagcatgcatttgttgtgaatttgacggtggattttccttttacaataatactgattaatcaatctgcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAAGCTCTTGCCCTTTATGGTCTAATCGTTGGTATTATCCTG
                              | |  |    |  ||   | |     |||| |||  | |     | |||||  |   | |   | ||||| || ||||| ||||| || || ||||||||||||||||| ||||| ||||| ||||| || ||| | || || || ||||| || || || || ||||||
------------------------------gtaagttcgatcgatcaaaagccatctttttcttcgatatctccattgattggtttgtttttctttgcagGGCGAATGCGCAGCAACCCAAGCTTTTTGTTGGAATGATCCTCATTCTCATCTTTGCCGAGGCTTTGGCTCTATACGGTCTCATTGTGGGAATCATCCTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213592612|gb|DB961872.1|DB961872
EST:     GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAG                         AGCCAATGCACAGCAGCCAAAACTTTTT
genomic: GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGgtataatgct ... gcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTT
EST: gi|17402089|gb|BM178871.1|BM178871
EST:     GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAG                         AGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGgtataatgct ... gcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
EST: gi|37995105|gb|CF806694.1|CF806694
EST:     GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAG                         AGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGgtataatgct ... gcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
EST: gi|17020874|gb|BM091908.1|BM091908
EST:     GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAG                         AGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGgtataatgct ... gcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
EST: gi|192324177|gb|FK017908.1|FK017908
EST:     GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAG                         AGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGgtataatgct ... gcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
EST: gi|7478700|gb|AW666370.1|AW666370
EST:     GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAG                         AGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGgtataatgct ... gcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
EST: gi|20812984|gb|BQ297462.1|BQ297462
EST:     GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAG                         AGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGgtataatgct ... gcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
EST: gi|298171256|gb|HO016288.1|HO016288
EST:     GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAG                         AGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGgtataatgct ... gcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
EST: gi|21677486|gb|BQ629837.1|BQ629837
EST:     GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAG                         AGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGgtataatgct ... gcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
EST: gi|12689514|gb|BG155850.1|BG155850
EST:     GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAG                         AGCCAATGCACAGCAGCCAAAACTTTTTGGTGGAATGATTCTCATGCTCAT
genomic: GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGgtataatgct ... gcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
EST: gi|6719449|gb|AW307096.1|AW307096
EST:     GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAG                         AGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGgtataatgct ... gcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
EST: gi|192310643|gb|FK001067.1|FK001067
EST:     GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAG                         AGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGgtataatgct ... gcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
EST: gi|21994891|gb|BQ786419.1|BQ786419
EST:     GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAG                         AGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGgtataatgct ... gcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
EST: gi|26268827|gb|CA819890.1|CA819890
EST:     GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAG                         AGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGgtataatgct ... gcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
EST: gi|21602572|gb|BQ612903.1|BQ612903
EST:     GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAG                         AGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGgtataatgct ... gcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
EST: gi|6566902|gb|AW234534.1|AW234534
EST:     GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAG                         AGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGgtataatgct ... gcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
EST: gi|8282644|gb|BE020205.1|BE020205
EST:     GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAG                         AGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGgtataatgct ... gcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
EST: gi|21601071|gb|BQ611402.1|BQ611402
EST:     GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAG                         AGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGgtataatgct ... gcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
EST: gi|298164230|gb|HO013875.1|HO013875
EST:     GGCCTCTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAG                         AGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGgtataatgct ... gcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
EST: gi|9259204|gb|BE347351.1|BE347351
EST:     GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAG                         AGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGgtataatgct ... gcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
EST: gi|151407386|gb|EV277201.1|EV277201
EST:     GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAG                         AGTCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGgtataatgct ... gcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
EST: gi|17519208|gb|BM188250.1|BM188250
EST:     GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAG                         AGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGgtataatgct ... gcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
EST: gi|4295836|gb|AI442389.1|AI442389
EST:     GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAG                         AGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: GGCCTTTCTGCTGGCATGGCTATTGGTATTGTCGGTGATGCTGGTGTTAGgtataatgct ... gcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgacggtggattttccttttacaataatactgattaatcaatctgcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAAGCTCTTGCCCTTTATGGTCTAATCGTTGGTATTATCCTG
                                          tctgcttct  CT-rich tract
                 ttttacaataatactg  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gaacatatatctttttgcctttactagcatgcatttgttgtgaatttgacggtggattttccttttacaataatactgattaatcaatctgcttctgcagAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAAGCTCTTGCCCTTTATGGTCTAATCGTTGGTATTATCCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - ttttgcc
- - - - - - - - - - - - - gcatgca
- - - - - - - - - - - - - - - - - -tgttgtg