Sequence
atgc intronic sequence ATGC exonic sequence...ttaacaatacccgtgttaatatatatttaagttgtccttctagaaatcataatcatggctttgataaacaagtttaatgaataaatttgtaaattttcagGAAGTGGACACTGCCAGAATACAAATGCTACTGGAGGGGTGTGAACGGGGACACAAAAGTAGCAGTGGCATTTGGAATGGTTGCGGCGAGGAGATACGGA
Basic information
species | Glycine max |
transcript | GLYMA04G00680.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31305347|gb|CD390550.1|CD390550EST: CTTCAGCATGTCCGTCAGA GAAGTGGACACTGCCAGAATACAAATGCTACTGGAGGGGTGTGAACGGGGA
genomic: CTTCAGCATGTCCGTCAGAgtaagtttat ... aaattttcagGAAGTGGACACTGCCAGAATACAAATGCTACTGGAGGGGTGTGAACGGGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcataatcatggctttgataaacaagtttaatgaataaatttgtaaattttcagGAAGTGGACACTGCCAGAATACAAATGCTACTGGAGGGGTGTGAACGGGGACACAAAAGTAGCAGTGGCATTTGGAATGGTTGCGGCGAGGAGATACGGA
gtttaat putative branch site (score: 4)
ttttc putative PPT
tttgataaacaagttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttaacaatacccgtgttaatatatatttaagttgtccttctagaaatcataatcatggctttgataaacaagtttaatgaataaatttgtaaattttcagGAAGTGGACACTGCCAGAATACAAATGCTACTGGAGGGGTGTGAACGGGGACACAAAAGTAGCAGTGGCATTTGGAATGGTTGCGGCGAGGAGATACGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - -cccgtgt
- - - - - - - - - - - - - - - - - -ccttcta
- - - - - - - - - - - - - - - - - - - - - - - - - - -catggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaac