Sequence
atgc intronic sequence ATGC exonic sequencegtatatatgaaccacagcatcaaaaccctaatctaatcctccccctccataaacaaagtcagtgttgttttatgtgcagAAATGGTGTAAAGCTTGTGTTCTGCTTGATGGACTGAATAGAGGTTTGCCTAAACTGGGGATTGGACGAAGTCGTGGCAGTGTTGCTTCTGATAATGGAA
Basic information
species | Glycine max |
transcript | GLYMA04G00350.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G00350.2 (Glycine max), 3'ss of exon 2
lower sequence: AT2G44270.1 (Arabidopsis thaliana), 3'ss of exon 9
---gtatatatgaaccacagcatcaa--aaccctaatctaatcctccccctccataaacaaagtcag--tgtt---gtt-----ttatgtgcagAAATGGTGTAAAGCTTGTGTTCTGCTTGATGGACTGAATAGAGGTTTGCCTAAACTGGGGATTGGACGAAGTCGTGGCAGTGTTGCTTCTGATAATGGAA
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gtgagacctctcttttatcacatcaagtaaattgttttccataattagagttagtatatagtgtttgattgtttggattacaaatgatatgcagAAATGGTGTAAAGCTTGTGTTTTGCTGGAAGGACTGAACCGTGGTTTGCCTAAGATGGGTATTGGAAGACCTCGAGGCGTAAATGGTGATCATAATAAGG
upper sequence: GLYMA04G00350.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0001g00440.t01 (Vitis vinifera), 3'ss of exon 9
-----------------------gtatatatgaaccacagcatcaaaaccctaatctaatcctccccctccataaacaaagtcagtgttgttttatgtgcagAAATGGTGTAAAGCTTGTGTTCTGCTTGATGGACTGAATAGAGGTTTGCCTAAACTGGGGATTGGACGAAGTCGTGGC---AGTGTTGCTTCTGATAATGGAA
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acctacccttctgaatagttgggataaggatgatttg-agcatttaagttgaattagacacattgatgcatcttaatattatagatggt-ttatatctgcagAAATGGTGTAAAGCTTGTGTTTTGCTGGAAGGATTGAACCGCGGTTTGCCAAAGTTGGGTATTGGGCGGACTCGAGGCCTCAATAATGGTCTTGAGTGCG---
upper sequence: GLYMA04G00350.2 (Glycine max), 3'ss of exon 2
lower sequence: PP1S54_267V6.1 (Physcomitrella patens), 3'ss of exon 8
---------------------------------------------------------------------------------------------gtatat-atgaaccacagcatcaaaaccct--aatctaatcctccccctccataaacaaagtca-----gtgttgtttt---atgtgcagAAATGGTGTAAAGCTTGTGTTCTGCTTGATGGACTGAATAGAGGTTTGCCTAAACTGGGGATTGGACGAAGTCGTGGCAGTGTTGCTTCTGATAATGGAA
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gtaaactttcaaaagacccgtagaaaacccaacacgctttctgctgaaaacgatgagtttttgtttggaagattttttgagttgcccagatgggtatgtcacgtgttgtgggcttgggattttgcattttattagtttgaagttatgtccaggctcatcttcgagctgattatgaatgtgcagAAATGGTGCAAGGCTTGTGTTCTGCTTGATGGTCTAAATCGTGGATTGCCCAAGTTGGGCATTACTCGAACACGAGGCAAGGGCTTGGCAAATGGTGTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193561269|gb|FK520278.1|FK520278EST: GATGCCAGAGCAGGGAACATAGCGAACGCTGCGGTTATATTTCTAGTCAG AAATGGTGTAAAGCTTGTGTTCTGCTTGATGGACTGAATAGAGGTTTGCCT
genomic: GATGCCAGAGCAGGGAACAT-GCGAACGCTGCGGTTATATTTCTAGTCAGgtatatatga ... ttatgtgcagAAATGGTGTAAAGCTTGTGTTCTGCTTGATGGACTGAATAGAGGTTTGCCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.accctaatctaatcctccccctccataaacaaagtcagtgttgttttatgtgcagAAATGGTGTAAAGCTTGTGTTCTGCTTGATGGACTGAATAGAGGTTTGCCTAAACTGGGGATTGGACGAAGTCGTGGCAGTGTTGCTTCTGATAATGGAA
atctaat putative branch site (score: 3)
ttgtttt putative PPT
ataaacaaa TA-rich tract