1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gataattggtattttggggatttgctgattatcttaattgcataaactgcatactgtcttgtgtacttttgtaaatgttagatttcttttgttgttgtagGTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAG
species | Glycine max |
transcript | GLYMA03G42370.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAAAAAGGTCAATGATTTATGTG GTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTGEST: gi|208228908|gb|GE024272.1|GE024272
genomic: CAAAAAAGGTCAATGATTTATGTGgtatgtgtga ... gttgttgtagGTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTG
EST: AAAAGGTCAATGATTTATGTG GTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTGEST: gi|209702899|gb|BW667434.1|BW667434
genomic: AAAAGGTCAATGATTTATGTGgtatgtgtga ... gttgttgtagGTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTG
EST: NGCCGAGAAGGAAATCAAAGAAATGGCAAAAAAGGTCAATGATTTATGTG GTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTGEST: gi|208196800|gb|GE001032.1|GE001032
genomic: AGCCGAGAAGGAAATCAAAGAAATGGCAAAAAAGGTCAATGATTTATGTGgtatgtgtga ... gttgttgtagGTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTG
EST: AAAAGGTCAATGATTTATGTG GTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTG
genomic: AAAAGGTCAATGATTTATGTGgtatgtgtga ... gttgttgtagGTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTG
actgcatactgtcttgtgtacttttgtaaatgttagatttcttttgttgttgtagGTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAG
tttcttttgttgtt CT-rich tract
ttttgtaaatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gataattggtattttggggatttgctgattatcttaattgcataaactgcatactgtcttgtgtacttttgtaaatgttagatttcttttgttgttgtagGTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG