1 5' 3' | 2 5' 3' | 3 5' 3' |
...tctaagctaaaacgtttttttttttgtttttggttttccggagagaaatagtggatgaatttgtttggatatggtgtgttactccttaagtcgtaaatagGCTGACAAGATCAGCACCTTGTTGAAAACTGCAAAGGTTCCAGTAGACTCTTATTGGCCAACCTTGTTTGCTAAACTTGCTGAGAAGAAAAATCTTGGCG
species | Glycine max |
transcript | GLYMA03G42180.1 |
intron # | 2 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: TTGTTTCATACGCAGCTCTCATCCTTCATGAAGATGGAATTAGTGTAACT GCTGACAAGATCAGCACCTTGTTGAAAACTGCAAAGGTTCCAGTAGACTCTEST: gi|208081754|gb|GD879998.1|GD879998
genomic: TTG-TTCATACGCAGCTCTCATCCTTCATGAAGATGGAATTAGTGTAACTgtatcctttt ... tcgtaaatagGCTGACAAGATCAGCACCTTGTTGAAAACTGCAAAGGTTCCAGTAGACTCT
EST: CTTGTTCATACGCAGCTCTCATCCTTCATGAAGATGGAATTAGTGTAACT GCTGACAAGATCAGCACCTTGTTGAAAACTGCAAAGGTTCCAGTAGACTCT
genomic: CTTGTTCATACGCAGCTCTCATCCTTCATGAAGATGGAATTAGTGTAACTgtatcctttt ... tcgtaaatagGCTGACAAGATCAGCACCTTGTTGAAAACTGCAAAGGTTCCAGTAGACTCT
aaatagtggatgaatttgtttggatatggtgtgttactccttaagtcgtaaatagGCTGACAAGATCAGCACCTTGTTGAAAACTGCAAAGGTTCCAGTAGACTCTTATTGGCCAACCTTGTTTGCTAAACTTGCTGAGAAGAAAAATCTTGGCG
ctccttaag putative branch site
aatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctaagctaaaacgtttttttttttgtttttggttttccggagagaaatagtggatgaatttgtttggatatggtgtgttactccttaagtcgtaaatagGCTGACAAGATCAGCACCTTGTTGAAAACTGCAAAGGTTCCAGTAGACTCTTATTGGCCAACCTTGTTTGCTAAACTTGCTGAGAAGAAAAATCTTGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA