1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtactttgctgttctcatttctcgtgtaaccctaatttcctcgattctttctgattgagtagtgctgtgttggaaaagGTTGTGTTGCCGTATTTGAAATCCAAGTTGCATTCAATCTACAACAGAGAAAGGGAAGCCAGGCTTCAAGCCACTCTATGGGGAGATGAAACCCAAGGCT
species | Glycine max |
transcript | GLYMA03G41050.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAGCAGCGCATTACGGAGGCGCCAGAGAGTTCTTTCCGTTGNNNNNNNG GTTGTGTTGCCGTATTTGAAATCCAAGTTGCATTCAATCTACAACAGAGAAEST: gi|24135703|gb|BU926213.1|BU926213
genomic: GCAGCAGCGCATTACGGAGGCGCCAGAGAGTTCTTTCCGTTGTTTTTTTGgtactttgct ... gttggaaaagGTTGTGTTGCCGTATTTGAAATCCAAGTTGCATTCAATCTACAACAGAGAA
EST: GCAGCAGCGCATTACGGAGGCGCCAGAGAGTTCTTTCCGTTGNNNNNNNG GTTGTGTTGCCGTATTTGAAATCCAAGTTGCATTCAATCTACAACAGAGAAEST: gi|209710153|gb|BW658902.1|BW658902
genomic: GCAGCAGCGCATTACGGAGGCGCCAGAGAGTTCTTTCCGTTGTTTTTTTGgtactttgct ... gttggaaaagGTTGTGTTGCCGTATTTGAAATCCAAGTTGCATTCAATCTACAACAGAGAA
EST: GCAGCAGCGCATTACGGAGGCGCCAGAGAGTTCTTTCCGTTGNNNNNNNG GTTGTGTTGCCTTATTTGAAATCCAAGTTGCATTCAATCTACAACAGATAA
genomic: GCAGCAGCGCATTACGGAGGCGCCAGAGAGTTCTTTCCGTTGTTTTTTTGgtactttgct ... gttggaaaagGTTGTGTTGCCGTATTTGAAATCCAAGTTGCATTCAATCTACAACAGAGAA
gtgtaaccctaatttcctcgattctttctgattgagtagtgctgtgttggaaaagGTTGTGTTGCCGTATTTGAAATCCAAGTTGCATTCAATCTACAACAGAGAAAGGGAAGCCAGGCTTCAAGCCACTCTATGGGGAGATGAAACCCAAGGCT
ttctgat putative branch site (score: 3)
taattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactttgctgttctcatttctcgtgtaaccctaatttcctcgattctttctgattgagtagtgctgtgttggaaaagGTTGTGTTGCCGTATTTGAAATCCAAGTTGCATTCAATCTACAACAGAGAAAGGGAAGCCAGGCTTCAAGCCACTCTATGGGGAGATGAAACCCAAGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG