1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctttcactcaaaaactgggcacaaagggatgttaagatcccatatcagctataacttttggagttgatgttagaccaagttcgtgctcaatttttttcagGAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGATTCTCAACCCCAACCACCCACCATGCCTGGTCAG
species | Glycine max |
transcript | GLYMA03G40930.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGA GAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGAEST: gi|208159230|gb|GD953817.1|GD953817
genomic: CTGAAGATTGTTGAAAGCCAGAATTCAGGCAAGCTTAGCGAGTGTGCCGAgtaagaatta ... tttttttcagGAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGA
EST: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGA GAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGAEST: gi|208287799|gb|GE081334.1|GE081334
genomic: CTGAAGATTGTTGAAAGCCAGAATTCAGGCAAGCTTAGCGAGTGTGCCGAgtaagaatta ... tttttttcagGAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGA
EST: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGA GAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGAEST: gi|193419354|gb|FK385314.1|FK385314
genomic: CTGAAGATTGTTGAAAGCCAGAATTCAGGCAAGCTTAGCGAGTGTGCCGAgtaagaatta ... tttttttcagGAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGA
EST: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGA GAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGAEST: gi|193584554|gb|FK538980.1|FK538980
genomic: CTGAAGATTGTTGAAAGCCAGAATTCAGGCAAGCTTAGCGAGTGTGCCGAgtaagaatta ... tttttttcagGAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGA
EST: CTGAAGATTGTTGAAAGCCAGAATTCTGGCAAGCTGAGCGAGTGTGCCGA GAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGA
genomic: CTGAAGATTGTTGAAAGCCAGAATTCAGGCAAGCTTAGCGAGTGTGCCGAgtaagaatta ... tttttttcagGAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGA
cagctataacttttggagttgatgttagaccaagttcgtgctcaatttttttcagGAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGATTCTCAACCCCAACCACCCACCATGCCTGGTCAG
tttttttc CT-rich tract
tcaattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttcactcaaaaactgggcacaaagggatgttaagatcccatatcagctataacttttggagttgatgttagaccaagttcgtgctcaatttttttcagGAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGATTCTCAACCCCAACCACCCACCATGCCTGGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT