1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtattatatgaactctatactctatcttgttctattcccgcttcagatattttctcttattccaattcatcatgatgagaaaaccgttttctttttcttttctttctctaatagGTTTCAAAGTTAGGGTTGGGGTGTATGACCCTTAGTGGACGCTATAATGATCCACTTCCTGAAGAGGAAGGCATATCTGTTATTAAGCATGCTTTCAGCC
species | Glycine max |
transcript | GLYMA03G40880.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGAGAGTGTGCAGATTCCTCAAGTCAAACTTGGAACTCAAGGCCTTGTG GTTTCAAAGTTAGGGTTGGGGTGTATGACCCTTAGTGGACGCTATEST: gi|22523340|gb|BU082151.1|BU082151
genomic: CAGAGAGTGTGCAGATTCCTCAAGTCAAACTTGGAACTCAAGGCCTTGTGgtattatatg ... tctctaatagGTTTCAAAGTTAGGGTTGGGGTGTATGACCCTTAGTGGACGCTAT
EST: CAGAGAGTGTGCAGATTCCTCAAGTCAAACTTGGAACTCAAGGCCTTGTG GTTTCAAAGTTAGGGTTGGGGTGTATGACCCTTAGTGGACGCTATAATGATEST: gi|254343581|gb|GR857337.1|GR857337
genomic: CAGAGAGTGTGCAGATTCCTCAAGTCAAACTTGGAACTCAAGGCCTTGTGgtattatatg ... tctctaatagGTTTCAAAGTTAGGGTTGGGGTGTATGACCCTTAGTGGACGCTATAATGAT
EST: CAGAGAGTGTGCAGATTCCTCAAGTCAAACTTGGAACTCAAGGCCTTGTG GTTTCAAAGTTAGGGTTGGGGTGTATGACCCTTAGTGGACGCTATAATGAT
genomic: CAGAGAGTGTGCAGATTCCTCAAGTCAAACTTGGAACTCAAGGCCTTGTGgtattatatg ... tctctaatagGTTTCAAAGTTAGGGTTGGGGTGTATGACCCTTAGTGGACGCTATAATGAT
ttccaattcatcatgatgagaaaaccgttttctttttcttttctttctctaatagGTTTCAAAGTTAGGGTTGGGGTGTATGACCCTTAGTGGACGCTATAATGATCCACTTCCTGAAGAGGAAGGCATATCTGTTATTAAGCATGCTTTCAGCC
ccgttttctttttctt CT-rich tract
ttttctttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattatatgaactctatactctatcttgttctattcccgcttcagatattttctcttattccaattcatcatgatgagaaaaccgttttctttttcttttctttctctaatagGTTTCAAAGTTAGGGTTGGGGTGTATGACCCTTAGTGGACGCTATAATGATCCACTTCCTGAAGAGGAAGGCATATCTGTTATTAAGCATGCTTTCAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA