1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacatattttaatgcttgcgtgtgtgtgtgtgtgtgagagagagagagatgttggggaaaccaaacccaatagtactttcgaacataaatgttgtttttataactaatttgatgttctgtcaattctttgattctgttgactagGCTCTGAAGCAGCTACCTAGAGAAAAGATCCAGCTAGCCACAAAATTTGGTATTGCGAGATTAGATTTTTCTAACATGCTGATCAAGGGTTCGCCTGAAT
species | Glycine max |
transcript | GLYMA03G40870.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATACCGCTGATGTTTATGGAGCCGGTGCTAATGAAATTTTGCTTGGAAAG GCTCTGAAGCAGCTACCTAGAGAAAAGATCCAGCTAGCCACAAAATTTGGTEST: gi|8827996|gb|BE211726.1|BE211726
genomic: ATACCGCTGATGTTTATGGAGCCGGTGCTAATGAAATTTTGCTTGGAAAGgtacatattt ... tgttgactagGCTCTGAAGCAGCTACCTAGAGAAAAGATCCAGCTAGCCACAAAATTTGGT
EST: ATACCGCTGATGTTTATGGAGCCGGTGCTAATGAAATTTTGCTTGGAAAG GCTCTGAAGCAGCTACCTAGAGAAAAGATCCAGCTAGCCACAAAATTTGGTEST: gi|151407626|gb|EV277441.1|EV277441
genomic: ATACCGCTGATGTTTATGGAGCCGGTGCTAATGAAATTTTGCTTGGAAAGgtacatattt ... tgttgactagGCTCTGAAGCAGCTACCTAGAGAAAAGATCCAGCTAGCCACAAAATTTGGT
EST: ATACCGCTGATGTTTATGGAGCCGGTGCCAATGAAATTTTGCTTGGAAAG GCTCTGAAGCAGCTACCTAGAGAAAAGACCCAGCTAGCCACAAAATTTGGTEST: gi|208227282|gb|GE024215.1|GE024215
genomic: ATACCGCTGATGTTTATGGAGCCGGTGCTAATGAAATTTTGCTTGGAAAGgtacatattt ... tgttgactagGCTCTGAAGCAGCTACCTAGAGAAAAGATCCAGCTAGCCACAAAATTTGGT
EST: AAATTTTGCTTGGAAAG GCTCTGAAGCAGCTACCTAGAGAAAAGATCCAGCTAGCCACAAAATTTGGTEST: gi|193358124|gb|FK319710.1|FK319710
genomic: AAATTTTGCTTGGAAAGgtacatattt ... tgttgactagGCTCTGAAGCAGCTACCTAGAGAAAAGATCCAGCTAGCCACAAAATTTGGT
EST: ATACCGCTGATGTTTATGGAGCCGGTGCTAATGAAATTTTGCTTGGAAAG GCTCTGAAGCAGCTACCTAGAGAAAAGATCCAGCTAGCCACAAAATTTGGT
genomic: ATACCGCTGATGTTTATGGAGCCGGTGCTAATGAAATTTTGCTTGGAAAGgtacatattt ... tgttgactagGCTCTGAAGCAGCTACCTAGAGAAAAGATCCAGCTAGCCACAAAATTTGGT
tgttgtttttataactaatttgatgttctgtcaattctttgattctgttgactagGCTCTGAAGCAGCTACCTAGAGAAAAGATCCAGCTAGCCACAAAATTTGGTATTGCGAGATTAGATTTTTCTAACATGCTGATCAAGGGTTCGCCTGAAT
ttctgtt CT-rich tract
tttttataactaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatattttaatgcttgcgtgtgtgtgtgtgtgtgagagagagagagatgttggggaaaccaaacccaatagtactttcgaacataaatgttgtttttataactaatttgatgttctgtcaattctttgattctgttgactagGCTCTGAAGCAGCTACCTAGAGAAAAGATCCAGCTAGCCACAAAATTTGGTATTGCGAGATTAGATTTTTCTAACATGCTGATCAAGGGTTCGCCTGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT