Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctggaccattatttctctaagcacacaccacatccttaattattaggaccatttctcgattaaacattactaatttggatatataatttcacagAATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAG

Basic information

species Glycine max
transcript GLYMA03G40760.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40760.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G138268_T01 (Zea mays), 3'ss of exon 3
gtaagt-ctggaccattatttctctaagcacacaccacatccttaattattaggaccatttctcgattaaacattactaatt-tggatatataatttcacagAATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAG
|| ||  ||| |    |     |||   |   ||| | |  | | |||||    |  ||| |   ||   | | || ||||  |    || | ||||  ||| |||||||| ||||||||||||||||| || || ||||||||||| || || || || || |
gtgagcactgcatgcatgcgcttctt--cctgcactatactccttattat----attattgcctaatcggaaaataataataatttccatttcatttt-cagGATGTTCGTCGAATCATGCAAGCGCCTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGG

upper sequence: GLYMA03G40760.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0081g00010.t01 (Vitis vinifera), 3'ss of exon 3
-------gtaagtctggaccattatttc---tctaagcacacaccacatccttaattattaggaccattt-ctcgattaaacattactaatttggatatataatttcacagAATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAG
         ||   | ||| ||  ||||   | |||       | |   | |  || | |    ||||    |  | |||  | | ||  ||||||  |  |||    ||| |||||||| ||||| ||||||||| |||| |||||||||||||| ||||| ||||| || |
gtaagttacaacatttgacaatattttccaatttaaattgtttcaaaggcttacatcaattaatccatagattttactaattaatccttctttggaatttgaat----cagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGCCATCGGACTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213593460|gb|DB977147.1|DB977147
EST:     TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGA                         AATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATAGGAGGC
genomic: TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGAgtaagtctgg ... aatttcacagAATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGC
EST: gi|254347843|gb|GR854092.1|GR854092
EST:     TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGA                         AATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAG-C
genomic: TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGAgtaagtctgg ... aatttcacagAATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGC
EST: gi|192299772|gb|FG993322.1|FG993322
EST:     TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGA                         AATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATTTGAGGC
genomic: TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGAgtaagtctgg ... aatttcacagAATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGC
EST: gi|192305993|gb|FG993625.1|FG993625
EST:     TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGA                         AATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATTTGAGGC
genomic: TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGAgtaagtctgg ... aatttcacagAATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGC
EST: gi|26060235|gb|CA803149.1|CA803149
EST:     TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGA                         AATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGC
genomic: TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGAgtaagtctgg ... aatttcacagAATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGC
EST: gi|254347844|gb|GR854093.1|GR854093
EST:     TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGA                         AATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGC
genomic: TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGAgtaagtctgg ... aatttcacagAATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGC
EST: gi|58019236|gb|CX705978.1|CX705978
EST:     TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGA                         AATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGC
genomic: TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGAgtaagtctgg ... aatttcacagAATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGC
EST: gi|151405406|gb|EV275220.1|EV275220
EST:     TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGA                         AATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAG-C
genomic: TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGAgtaagtctgg ... aatttcacagAATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGC
EST: gi|37994207|gb|CF805953.1|CF805953
EST:     TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGA                         AATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGC
genomic: TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGAgtaagtctgg ... aatttcacagAATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGC
EST: gi|37996072|gb|CF807661.1|CF807661
EST:     TATGAAGACNAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGA                         AATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGC
genomic: TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGAgtaagtctgg ... aatttcacagAATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGC
EST: gi|254337775|gb|GR845345.1|GR845345
EST:     TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGA                         AATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGC
genomic: TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGAgtaagtctgg ... aatttcacagAATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGC
EST: gi|192331445|gb|FK022721.1|FK022721
EST:     TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGA                         AATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATTTGAGGC
genomic: TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGAgtaagtctgg ... aatttcacagAATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGC
EST: gi|151407948|gb|EV277763.1|EV277763
EST:     TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGA                         AATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATG
genomic: TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGAgtaagtctgg ... aatttcacagAATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATG
EST: gi|26047583|gb|CA784317.1|CA784317
EST:     TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGA                         AATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGC
genomic: TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGAgtaagtctgg ... aatttcacagAATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGC
EST: gi|209708631|gb|BW678808.1|BW678808
EST:     TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGA                         AATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGC
genomic: TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGAgtaagtctgg ... aatttcacagAATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGC
EST: gi|192306903|gb|FK002625.1|FK002625
EST:     TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGA                         AATGTTCGTGGA
genomic: TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGAgtaagtctgg ... aatttcacagAATGTTCGTGGA
EST: gi|207763941|gb|GD738834.1|GD738834
EST:     TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGA                         AATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGC
genomic: TATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGAgtaagtctgg ... aatttcacagAATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattaggaccatttctcgattaaacattactaatttggatatataatttcacagAATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAG
                            tactaat  putative branch site (score: 1)
                   attaaacattactaat  TA-rich tract