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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttattttcatcaatatttcttatgttgcttgatttcaattttgatagttttcttagttgcacagtctagaatcgtttgtaagttggctcttttctgcagCATTGTGCAGGCATAAATTGTCTGGCTCTACTTACGTCTGCGGCATCTGATGGGTCTGATTATCTCTTCACCGGCAGCCGTGATGGCAGGTTAAAACGAT

Basic information

species Glycine max
transcript GLYMA03G40440.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40440.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 2
tttattttcatcaatatttcttatgttgct--tgatttcaattttgatagttttcttagttgcacagtctagaatcgtttgtaagttggctcttt-tctgcagCATTGTGCAGGCATAAATTGTCTGGCTCTACTTACGTCTGCGGCATCTGATGGGTCTGATTATCTCTTCACCGGCAGCCGTGATGGCAGGTTAAAACGAT
|    |||  |   |   | || ||||| |  |  ||| | | ||    | ||| | | ||     ||    | ||  ||||    ||  ||  | | |||||||||||||||||||||||||| ||||| ||   | | |   |||  ||||||||  |||||| |||||||| || ||||||||||||| | | ||  | |
tcccctttgctaggttactgttctgttgataattcttttactgttagaggatttataaattcttatgtt---actccattgtggaatgtttccctatttgcagCATTGTGCAGGCATAAATTGTTTGGCTGTATGGAAGCCATTGGCTCCTGATGGGCGTGATTACCTCTTCACTGGAAGCCGTGATGGCACGCTGAAGAGGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209712994|gb|BW684288.1|BW684288
EST:     GTAAGGAGAAGAGATTAACCTACGTGTTGAATGATTCTGATGACATAAAG                         CATTGTGCAGGCATAAATTGTCTGGCTCTACTTACGTCTGCGGCATCTGAT
genomic: GTAAGGAGAAGAGATTAACCTACGTGTTGAATGATTCTGATGACATAAAGgtgaactcat ... ttttctgcagCATTGTGCAGGCATAAATTGTCTGGCTCTACTTACGTCTGCGGCATCTGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagttttcttagttgcacagtctagaatcgtttgtaagttggctcttttctgcagCATTGTGCAGGCATAAATTGTCTGGCTCTACTTACGTCTGCGGCATCTGATGGGTCTGATTATCTCTTCACCGGCAGCCGTGATGGCAGGTTAAAACGAT
                                          ctcttttctgc  CT-rich tract
                              tttgtaa  TA-rich tract