1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...caatgaaaagctgattgcgggtttcaattttctcattggaattgtgctttactttggcactgcatccagaagaataattgcaccttttttttcttgttagGCAATATATCTATTTGTATTTGGGATTCCATTATTCGTCGACAGCAATGAACATACTCATGGGAAGTGGAACTTGTGGGTTGTCCACAAGCTGTTGCTCA
species | Glycine max |
transcript | GLYMA03G40260.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAACTTTTGGTATCTCAACGCTCGTTGTTGGCTTGGATATACTGTTGAAG GCAATATATCTATTTGTATTTGGGATTCCATTATTCGTCGACAGCAATGAAEST: gi|7640336|gb|AW734640.1|AW734640
genomic: GAACTTTTGGTATCTCAACGCTCGTTGTTGGCTTGGATATACTGTTGAAGgtattctttg ... ttcttgttagGCAATATATCTATTTGTATTTGGGATTCCATTATTCGTCGACAGCAATGAA
EST: GAACTTTTGGTATCTCAACGCTCGTTGTTGGCTTGGATATACTGTTGAAG GCAATATATCTATTTGTATTTGGGAT
genomic: GAACTTTTGGTATCTCAACGCTCGTTGTTGGCTTGGATATACTGTTGAAGgtattctttg ... ttcttgttagGCAATATATCTATTTGTATTTGGGAT
gctttactttggcactgcatccagaagaataattgcaccttttttttcttgttagGCAATATATCTATTTGTATTTGGGATTCCATTATTCGTCGACAGCAATGAACATACTCATGGGAAGTGGAACTTGTGGGTTGTCCACAAGCTGTTGCTCA
ttgcaccttttttttc CT-rich tract
ttttttttcttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatgaaaagctgattgcgggtttcaattttctcattggaattgtgctttactttggcactgcatccagaagaataattgcaccttttttttcttgttagGCAATATATCTATTTGTATTTGGGATTCCATTATTCGTCGACAGCAATGAACATACTCATGGGAAGTGGAACTTGTGGGTTGTCCACAAGCTGTTGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT