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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgttcaattgtgtattgctttatgtgttattgcatttcgtgccgattctgctgtttgtgagagttaatactttgctgttgtaatttgtacaacctgctatgactgtttttgaatctcagTTGGTGCCAGCTGTCACGGAGCTTGTTGTTGCAGAATTGATGTACTTGCAGTATATGGATCCTAAAGAGCCGATTTTTATTTACATAAATTCCACTGGGA

Basic information

species Glycine max
transcript GLYMA03G39570.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G39570.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0060g02160.t01 (Vitis vinifera), 3'ss of exon 2
gtaagtgttcaattgtgtattgctttatgtgttattgcatttcgtgccgattctgctgtttgtgagagttaatactttgctgttgtaatttgtacaacctgctatgactgtttttgaatctcagTTGGTGCCAGCTGTCACGGAGCTTGTTGTTGCAGAATTGATGTACTTGCAGTATATGGATCCTAAAGAGCCGATTTTTATTTACATAAATTCCACTGGGA
                       ||| ||  || ||    ||  |    ||   | |  | ||     ||| ||| |||    |  ||| |||       | ||  ||  |||     | ||||||||||||||||||||| ||||||||  |||||||||| |||||| ||||||  |||||||| ||||| ||  | | | |||| || ||||  ||||| |
----------------------ttttttgatttttttatgttattatttatatggttagtagttcacattactaccttgaccatacaatatgtctgggaagtta--accatttgattctatcagTTGGTGCCAGCTGTCACAGAGCTTGTCATTGCAGAATTAATGTACCTGCAGTGGATGGATCCCAAAGAACCAGTATATGTTTATATTAATTGTACTGGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192293965|gb|FG987134.1|FG987134
EST:     ACCTGCCTTCGCTGCTTCTCCATGGTAGAATTGTTTACATTGGCATGCCT                         TTGGTGCCAGCTGTCACGGAGCTTGTTGTTGCAGAATTGATGTGCTTGCAG
genomic: ACCTGCCTTCGCTGCTTCTCCATGGTAGAATTGTTTACATTGGCATGCCTgtaagtgttc ... tgaatctcagTTGGTGCCAGCTGTCACGGAGCTTGTTGTTGCAGAATTGATGTACTTGCAG
EST: gi|209702632|gb|BW660629.1|BW660629
EST:     ACCTGCCTTCGCTGCTTCTCCATGGTAGAATTGTTTACATTGGCATGCCT                         TTGGTGCCAGCTGTCACGGAGCTTGTTGTTGCAGAATTGATGTACTTGCAG
genomic: ACCTGCCTTCGCTGCTTCTCCATGGTAGAATTGTTTACATTGGCATGCCTgtaagtgttc ... tgaatctcagTTGGTGCCAGCTGTCACGGAGCTTGTTGTTGCAGAATTGATGTACTTGCAG
EST: gi|7478792|gb|AW666408.1|AW666408
EST:     ACCTGCCTTCGCTGCTTCTCCATGGTAGAATTGTTTACATTGGCATGCCT                         TTGGTGCCAGCTGTCACGGAGCTTGTTGTTGCAGAATTGATGTACTTGCAG
genomic: ACCTGCCTTCGCTGCTTCTCCATGGTAGAATTGTTTACATTGGCATGCCTgtaagtgttc ... tgaatctcagTTGGTGCCAGCTGTCACGGAGCTTGTTGTTGCAGAATTGATGTACTTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatactttgctgttgtaatttgtacaacctgctatgactgtttttgaatctcagTTGGTGCCAGCTGTCACGGAGCTTGTTGTTGCAGAATTGATGTACTTGCAGTATATGGATCCTAAAGAGCCGATTTTTATTTACATAAATTCCACTGGGA
 agttaat  putative branch site (score: 4)
                                      ctgttttt  putative PPT
             ttgtaattt  TA-rich tract