Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactctctctctctctctcactcatcaacttattttcctagggtttcctcatcgtttttttattttatgttttaattcattggattttgttttcctctcaatttcttatgggacttaacacgtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCTAGGACTGCGCAAGTTGCAATTGTTGACCATGCTAAACAA

Basic information

species Glycine max
transcript GLYMA03G39530.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192308192|gb|FK001290.1|FK001290
EST:     ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGAC                         GTACTGGGTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGACgtaactctct ... gtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|213613616|gb|DB963304.1|DB963304
EST:     ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGACgtaactctct ... gtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|151403727|gb|EV273537.1|EV273537
EST:     ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGACgtaactctct ... gtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|7692294|gb|AW760404.1|AW760404
EST:     ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGACgtaactctct ... gtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|192295129|gb|FG986848.1|FG986848
EST:     ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGACgtaactctct ... gtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|192303311|gb|FG995619.1|FG995619
EST:     ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGACgtaactctct ... gtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|192322679|gb|FK015016.1|FK015016
EST:     ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGACgtaactctct ... gtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|7234298|gb|AW569637.1|AW569637
EST:     ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCGT
genomic: ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGACgtaactctct ... gtgcttccagGTACTGGTTACTTCGT
EST: gi|298184947|gb|HO030160.1|HO030160
EST:     ACAACAAACCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGACgtaactctct ... gtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|4282509|gb|AI440540.1|AI440540
EST:     ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGACgtaactctct ... gtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|9903152|gb|BE612120.1|BE612120
EST:     ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGACgtaactctct ... gtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|21677242|gb|BQ629593.1|BQ629593
EST:     ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGACgtaactctct ... gtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|18040959|gb|BM309253.1|BM309253
EST:     ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGACgtaactctct ... gtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|24135512|gb|BU926022.1|BU926022
EST:     ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGACgtaactctct ... gtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|9987385|gb|BE661493.1|BE661493
EST:     TTCCAATGCCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: TTCCAATGCCCAACCGAAGCGGAGACgtaactctct ... gtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|151397822|gb|EV267695.1|EV267695
EST:     ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGACgtaactctct ... gtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|22541742|gb|BU091585.1|BU091585
EST:     ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGACgtaactctct ... gtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|192313101|gb|FK004691.1|FK004691
EST:     ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGACgtaactctct ... gtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|192299932|gb|FG992145.1|FG992145
EST:     ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGACgtaactctct ... gtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|298194345|gb|HO040993.1|HO040993
EST:     ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGACgtaactctct ... gtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|298180513|gb|HO022066.1|HO022066
EST:     ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGACgtaactctct ... gtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|151399910|gb|EV269781.1|EV269781
EST:     ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGACgtaactctct ... gtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|151399252|gb|EV269123.1|EV269123
EST:     ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCT
genomic: ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGACgtaactctct ... gtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCT
EST: gi|192313102|gb|FK004692.1|FK004692
EST:     ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGACgtaactctct ... gtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
EST: gi|9203900|gb|BE330124.1|BE330124
EST:     ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGAC                         GTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT
genomic: ACAACAAATCGCACTTGATTTCCATTCCAATGCCCAACCGAAGCGGAGACgtaactctct ... gtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattggattttgttttcctctcaatttcttatgggacttaacacgtgcttccagGTACTGGTTACTTCGTTCGGTGAGCTTGAGGGTAATGCATTTCTTGAACCTAGGACTGCGCAAGTTGCAATTGTTGACCATGCTAAACAA
                                    acttaac  putative branch site (score: 3)
                                              tgcttcc  putative PPT
       attttgtttt  TA-rich tract