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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcatacgctgtgttaattctcaatacaatatcatttttttgggggggatacttcttttgttgagacattgttgcttacagcatgctccatcttgcagGAAATGGAAGCCACCGTTGTCGATGGTAACGGAACGGAGACCGGACATATCATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG

Basic information

species Glycine max
transcript GLYMA03G38850.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G38850.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 2
-----------gtatgtcatacgctg-tgttaattctcaatacaatatcat-ttttttgggggggatacttcttttgttgag-----acattg-ttgcttacagca-tgctccatcttgcagGAAATGGAAGCCACCGTTGTCGATGGTAACGGAACGGAGACCGGACATATCATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG
               |||  | |||  ||||  |||    |||  |  | | | |||||   |   |   |   || ||||       ||||| || || |   || | ||  || || ||||| |||||||| || ||||| || ||||| ||||| ||||| || ||||| ||||| || || ||||| ||||||||||| ||||| ||||||
gtatgtgagggactggtctaatgcttctgtttcttcgtgttactgttccttgtcttttgcctgcacttaattgattattgatcatttgcattggttactgaagacagttcttgatttttcagGAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATAATTGTGACGACTATTGGTGGTAGAAATGGCCAACCAAAGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151410500|gb|EV280315.1|EV280315
EST:     TTGATAGATTGCCTGAGGAGATGAATGATATGAGAATTAGGGACGATAAA                         GAAATGGAAGCCACCGTTGTCGATGGTAACGGAACGGAGACCGGACATATC
genomic: TTGATAGATTGCCTGAGGAGATGAATGATATGAGAATTAGGGACGATAAAgtatgtcata ... catcttgcagGAAATGGAAGCCACCGTTGTCGATGGTAACGGAACGGAGACCGGACATATC
EST: gi|192296806|gb|FG993104.1|FG993104
EST:     TTGATAGATTGCCTGAGGAGATGAATGATATGAGAATTAGGGACGATAAA                         GAAATGGAAGCCACCGTTGTCGATGGTAACGGAACGGAGACCGGACATATC
genomic: TTGATAGATTGCCTGAGGAGATGAATGATATGAGAATTAGGGACGATAAAgtatgtcata ... catcttgcagGAAATGGAAGCCACCGTTGTCGATGGTAACGGAACGGAGACCGGACATATC
EST: gi|298174237|gb|HO017573.1|HO017573
EST:     TTGATAGATTGCCTGAGGAGATGAATGATATGAGAATTAGGGACGATAAA                         GAAATGGAAGCCACCGTTGTCGATGGTAACGGAACGGAGACCGGACATATC
genomic: TTGATAGATTGCCTGAGGAGATGAATGATATGAGAATTAGGGACGATAAAgtatgtcata ... catcttgcagGAAATGGAAGCCACCGTTGTCGATGGTAACGGAACGGAGACCGGACATATC
EST: gi|151406384|gb|EV276199.1|EV276199
EST:     TTGATAGATTGCCTGAGGAGATGAATGATATGAGAATTAGGGACGATAAA                         GAAATGGAAGCCACCGTTGTCGATGGTAACGGAACGGAGACCGGACATATC
genomic: TTGATAGATTGCCTGAGGAGATGAATGATATGAGAATTAGGGACGATAAAgtatgtcata ... catcttgcagGAAATGGAAGCCACCGTTGTCGATGGTAACGGAACGGAGACCGGACATATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggggatacttcttttgttgagacattgttgcttacagcatgctccatcttgcagGAAATGGAAGCCACCGTTGTCGATGGTAACGGAACGGAGACCGGACATATCATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG
                             tgcttac  putative branch site (score: 2)
                                          ctccatctt  putative PPT
         ttctttt  TA-rich tract