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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgatcgccgaaaaccaaaaccaaaacttttcgatatttcgtctgaactgtatgtgtattggattgaactttttgtagGTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCGTTTGTTCCTCACGACCAAGAGTTTTATCTGTCTATTGTTTCTGAAAGGC

Basic information

species Glycine max
transcript GLYMA03G38810.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298192506|gb|HO036588.1|HO036588
EST:     TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAG                         GTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
genomic: TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAGgtgtgatcgc ... ctttttgtagGTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
EST: gi|7588547|gb|AW704270.1|AW704270
EST:     TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAG                         GTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
genomic: TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAGgtgtgatcgc ... ctttttgtagGTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
EST: gi|213596238|gb|DB960170.1|DB960170
EST:     TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAG                         GTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
genomic: TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAGgtgtgatcgc ... ctttttgtagGTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
EST: gi|298186643|gb|HO037276.1|HO037276
EST:     TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAG                         GTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
genomic: TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAGgtgtgatcgc ... ctttttgtagGTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
EST: gi|298181603|gb|HO025778.1|HO025778
EST:     TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAG                         GTTGAGATGGGAGGTTGCAAAGCGCCTATAACCACTTTTATTGTCGAACCG
genomic: TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAGgtgtgatcgc ... ctttttgtagGTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
EST: gi|151395479|gb|EV265356.1|EV265356
EST:     TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAG                         GTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
genomic: TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAGgtgtgatcgc ... ctttttgtagGTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
EST: gi|10846293|gb|BF069216.1|BF069216
EST:     TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAG                         GTTGAGATGGGAGGTTGCANGGCGCCTATAACCACTTTTATTGTCGAACCG
genomic: TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAGgtgtgatcgc ... ctttttgtagGTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
EST: gi|298186900|gb|HO033999.1|HO033999
EST:     TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAG                         GTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
genomic: TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAGgtgtgatcgc ... ctttttgtagGTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
EST: gi|120495312|gb|EH223479.1|EH223479
EST:     TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAG                         GTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
genomic: TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAGgtgtgatcgc ... ctttttgtagGTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
EST: gi|208082005|gb|GD879507.1|GD879507
EST:     CGTCAAAGCACGCCTCGGCGTTGAG                         GTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
genomic: CGTCAAAGCACGCCTCGGCGTTGAGgtgtgatcgc ... ctttttgtagGTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
EST: gi|151407958|gb|EV277773.1|EV277773
EST:     TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAG                         GTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
genomic: TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAGgtgtgatcgc ... ctttttgtagGTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacttttcgatatttcgtctgaactgtatgtgtattggattgaactttttgtagGTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCGTTTGTTCCTCACGACCAAGAGTTTTATCTGTCTATTGTTTCTGAAAGGC
                                             ctttttgt  CT-rich tract
                                           aacttttt  TA-rich tract