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...ttgattcatgtgttcgatggtttggtagatgaatatttgaacatatgatccatctcatgtgattgatggacctttttaacattatgatattatgatgcagGAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCTGCTATAAATCCTCGTTTCTCCAATTATACA
species | Glycine max |
transcript | GLYMA03G38520.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCATATTCTTCAG GAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCTEST: gi|192329589|gb|FK021903.1|FK021903
genomic: CGGAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCATATTCTTCAGgtgattcatt ... tatgatgcagGAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCT
EST: CGGAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCATATTCTTCAG GAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCTEST: gi|151398613|gb|EV268484.1|EV268484
genomic: CGGAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCATATTCTTCAGgtgattcatt ... tatgatgcagGAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCT
EST: CGGAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCATATTCTTCAG GAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCTEST: gi|19346536|gb|BM891416.1|BM891416
genomic: CGGAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCATATTCTTCAGgtgattcatt ... tatgatgcagGAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCT
EST: CGGAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCATATTCTTCAG GAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCTEST: gi|120532302|gb|EH260435.1|EH260435
genomic: CGGAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCATATTCTTCAGgtgattcatt ... tatgatgcagGAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCT
EST: CGGAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCATATTCTTCAG GAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCTEST: gi|6134067|gb|AW132396.1|AW132396
genomic: CGGAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCATATTCTTCAGgtgattcatt ... tatgatgcagGAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCT
EST: CGGAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCATATTCTTCAG GAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCTEST: gi|18713013|gb|BM522699.1|BM522699
genomic: CGGAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCATATTCTTCAGgtgattcatt ... tatgatgcagGAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCT
EST: CGGAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCATATTCTTCAG GAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCTEST: gi|192308925|gb|FK002149.1|FK002149
genomic: CGGAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCATATTCTTCAGgtgattcatt ... tatgatgcagGAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCT
EST: CGGAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCATATTCTTCAG GAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCTEST: gi|151411964|gb|EV281775.1|EV281775
genomic: CGGAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCATATTCTTCAGgtgattcatt ... tatgatgcagGAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCT
EST: CGGAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCATATTCTTCAG GAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCTEST: gi|105634074|gb|DW247372.1|DW247372
genomic: CGGAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCATATTCTTCAGgtgattcatt ... tatgatgcagGAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCT
EST: CGGAAGCACAACCGTTGACTAGTCTCAAACTTAACTCTCATATTCTTCAG GAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCTEST: gi|10238899|gb|BE807795.1|BE807795
genomic: CGGAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCATATTCTTCAGgtgattcatt ... tatgatgcagGAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCT
EST: CGGAAGCACAACCGTTGACTAGTCTCAAACTTAACTCTCATATTCTTCAG GAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCTEST: gi|9986530|gb|BE660638.1|BE660638
genomic: CGGAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCATATTCTTCAGgtgattcatt ... tatgatgcagGAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCT
EST: CGGAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCATATTCTTCAG GAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCT
genomic: CGGAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCATATTCTTCAGgtgattcatt ... tatgatgcagGAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCT
tgatccatctcatgtgattgatggacctttttaacattatgatattatgatgcagGAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCTGCTATAAATCCTCGTTTCTCCAATTATACA
ttttaac putative branch site (score: 2)
tttttaacattatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgattcatgtgttcgatggtttggtagatgaatatttgaacatatgatccatctcatgtgattgatggacctttttaacattatgatattatgatgcagGAGTCTACTGCTAAAGAGATTAATGAAAATCCCGAGGCAGGATGGGAGGCTGCTATAAATCCTCGTTTCTCCAATTATACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - tgtgttc
- - - - - - - - - ggtttgg
- - - - - - - - - - - - - - - - - - - - - - - - -ccatctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgattg