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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactatactaacacttttattcttcaatcaatacacgcaaaactttgcttgcttgttccctttttcactttcggttcgattaaaatttagattttagaccaaccaaaaaataaatgcattgtaaatatcagaaacactattaacatttgaatcgtgtgcatatattatagGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGAGCGATCTTTTAGCGACCCAAGCATTGTGGTGACAACCTACGAAGGACAA

Basic information

species Glycine max
transcript GLYMA03G37940.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G37940.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv07s0005g01710.t01 (Vitis vinifera), 3'ss of exon 2
gtactatactaacacttttattcttcaatcaatacacgcaaaactttgcttgcttgttccctttttcactttcggttcgattaaaatttagatt---ttagaccaaccaaaaaataaatgcattgtaaatatcagaaa-cactattaacatttgaatcgtgtgcatatattatagGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGAGCGATCTTTTAGCGACCCAAGCATTGTGGTGACAACCTACGAAGGACAA
||| | |||| ||||||  | ||    |||  |         | |||  | |   |||    ||   |     |    ||  |   |  | | |    |          ||  ||   | | |   |  | ||      | || ||   | ||   || | |   |  ||| |||||| |||||||||||||||||||  |||||||||||||||||||| |||||| | | ||| |  || ||   |||||| || || ||||||||||| |||
gtattgtactcacacttg-actc----atctttttgtttggtatttttatggagcgtttggattgagagaaatgaaaagaaaatgctcaaaaatggtctcactttcttcaactatgttttcttctcatttctcttccttctctcttgctaattttctcatttttgtggatt-tagGAGTTACTATCGTTGCACCAGTGCATCATGTAATGTGAAGAAACGAGTGGAGAGGTGTTTCAAGGATCCGGCCATTGTCGTAACCACCTACGAAGGTCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22927911|gb|BU545050.1|BU545050
EST:     AGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAG                         GAGCTANNATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA
genomic: AGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGgtactatact ... tatattatagGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA
EST: gi|17518817|gb|BM187859.1|BM187859
EST:     AGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAG                         GAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA
genomic: AGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGgtactatact ... tatattatagGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA
EST: gi|151411072|gb|EV280883.1|EV280883
EST:     GATGGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAG                         GAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA
genomic: GATGG-AGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGgtactatact ... tatattatagGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA
EST: gi|22540826|gb|BU090669.1|BU090669
EST:     AGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAG                         GAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA
genomic: AGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGgtactatact ... tatattatagGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA
EST: gi|10234013|gb|BE802901.1|BE802901
EST:     AGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAG                         GAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA
genomic: AGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGgtactatact ... tatattatagGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA
EST: gi|192309322|gb|FK000530.1|FK000530
EST:     AGATGGAGAAAGTACG-TCAAAA-GCTGTGAAAA-CAGCCCCTTTCC-AG                         GAGCTACTATCGTTGCAC-AGTGTTTCATGTA-TGTGAAGAAACGTGTGGA
genomic: AGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGgtactatact ... tatattatagGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcattgtaaatatcagaaacactattaacatttgaatcgtgtgcatatattatagGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGAGCGATCTTTTAGCGACCCAAGCATTGTGGTGACAACCTACGAAGGACAA
                      tattaac  putative branch site (score: 1)
                      tattaacatttgaat  TA-rich tract