Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattagatagctttttcaatatctaggccttttttttcttcctctaaggttgagtgttcaccttctatttagtctttgtctttcaactactaacaatatgttttggtatttagAGAATAATACGTTGTGGGGGAGCCGTAGATGATGATATGTCTAACATCTTAGTCGCCCAGCTTCTTTACCTTGATGTCCTAACAAG

Basic information

species Glycine max
transcript GLYMA03G37880.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G37880.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv07s0005g01530.t01 (Vitis vinifera), 3'ss of exon 3
gttattagatagctttttcaatatctaggccttttttttcttcctctaaggttgagtgttcaccttctatttagtctttgtctttcaactactaacaatatgttttggtatttagAGAATAATACGTTGTGGGGGAGCCGTAGATGATGATATGTCTAACATCTTAGTCGCCCAGCTTCTTTACCTTGATG-------TCCTAACAAG
     ||    |||  || | | | |    |||||  | |     |||| ||   ||   |||   ||  |  ||   ||  |   |  |       || | | ||       |||||||||| || ||||| ||||| || |||||||||||| | |||||| |||| || |||||||| || |||||||       |||| |||||
----gtaaggggctggttaagtttat----cttttgctacgcttactaaagt---gttggcacacacttatgcgttaatgcatccaatttgtctctgatttctctt------cagAGAATAATCCGATGTGGTGGAGCTGTTGATGATGATATGGCAAACATCATAGTGGCTCAGCTTCTCTATCTTGATGCTGTTGATCCTGACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caccttctatttagtctttgtctttcaactactaacaatatgttttggtatttagAGAATAATACGTTGTGGGGGAGCCGTAGATGATGATATGTCTAACATCTTAGTCGCCCAGCTTCTTTACCTTGATGTCCTAACAAG
                             tactaac  putative branch site (score: 0)
                                taacaatatgtttt  TA-rich tract