Sequence
atgc intronic sequence ATGC exonic sequencegttagtcttctcttctcttccttatagtttcattcctttttgttatattcattcatgttactattgagtgtggtttttgcagGTGGGAGATGCTGTGAAGGACCACGCTTGTTGGGAGAGACCCGAGGACATGGATACCCCAAGGAGTGTCTTTAAAGTAGATAAAAACAACCCTGGTTCTG
Basic information
species | Glycine max |
transcript | GLYMA03G37420.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G37420.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G02800.1 (Arabidopsis thaliana), 3'ss of exon 2
----gttagtcttctct------tctcttccttatagtttcattcctttttgttatattcattcatgttactattgagtgtggtttttgcagGTGGGAGATGCTGTGAAGGACCACGCTTGTTGGGAGAGACCCGAGGACATGGATACCCCAAGGAGTGTCTTTAAAGTAGATAAAAACAACCCTGGTTCTG
||| | | |||| |||| || | | | |||| | | | | | ||| || || ||| || |||| || ||| || | |||||| ||||||||||||||||| || |||||||| || ||||| ||||| |||||||| || || ||||| ||||||||||
gttttttactttgctctaaattctctcctcgaaaaaaaaaaacaagactttgggaaacagagtggt-ttaacgtt-agcgtg---ttcatagGTTGGTGATCCTAACATGGACCATGCTTGTTGGGAGAGACCAGAAGACATGGACACACCAAGAAGTGTGTTTAAAGTCGACAAGAACAATCCTGGTTCTG
upper sequence: GLYMA03G37420.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv07s0005g00740.t01 (Vitis vinifera), 3'ss of exon 2
-------------gttagtcttct-cttctcttccttatagt--ttcattcctttttgttatattcattcatg---------ttactattgagtgtggttttt--gcagGTGGGAGATGCTGTGAAGGACCACGCTTGTTGGGAGAGACCCGAGGACATGGATACCCCAAGGAGTGTCTTTAAAGTAGATAAAAACAACCCTGGTTCTG
| || ||| ||||||| | | || || | | ||| ||| | || ||| | | || | | ||||||| ||||||||| |||||| ||||| |||||||||||||||||||| ||||||||||| || |||||||||| || || ||||| | ||||| ||||||||| |
gttttgtgttttcttcagatctctgcttctctatttcagagcagttacctacatttgattagagtcgaaaatgcagaggagctgaggttttaacggggtttttctgcagGTGGGTGATGCTAATAAGGATCACGCTTGTTGGGAGAGACCAGAGGACATGGACACTTCAAGGAGTGTTTTCAAGGTAGACAGAAACACCCCTGGTTCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcattcctttttgttatattcattcatgttactattgagtgtggtttttgcagGTGGGAGATGCTGTGAAGGACCACGCTTGTTGGGAGAGACCCGAGGACATGGATACCCCAAGGAGTGTCTTTAAAGTAGATAAAAACAACCCTGGTTCTG
tttttgc CT-rich tract
tttttgttatattcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagtcttctcttctcttccttatagtttcattcctttttgttatattcattcatgttactattgagtgtggtttttgcagGTGGGAGATGCTGTGAAGGACCACGCTTGTTGGGAGAGACCCGAGGACATGGATACCCCAAGGAGTGTCTTTAAAGTAGATAAAAACAACCCTGGTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG