1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gcaactcacttttcattctcttctcttttatttctaacttattattattatgatggtgatggtgatgttgatgatgatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAA
species | Glycine max |
transcript | GLYMA03G37170.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACGACATGCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGCEST: gi|4306331|gb|AI443889.1|AI443889
genomic: ACGACATGCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGCEST: gi|11689790|gb|BF597466.1|BF597466
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: GCTTACTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG TTGGTGGAACCGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGCEST: gi|192311359|gb|FK003802.1|FK003802
genomic: GCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGCEST: gi|298177163|gb|HO027058.1|HO027058
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: CTTCCTCTTTCCCTTCTCAAGATTGCCCAAGGCCACCCTATG TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGCEST: gi|192311360|gb|FK003803.1|FK003803
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
tttctaacttattattattatgatggtgatggtgatgttgatgatgatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAA
aacttattattattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaactcacttttcattctcttctcttttatttctaacttattattattatgatggtgatggtgatgttgatgatgatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT