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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggtcatcaacaactctctctctctctctctctctctctctctttattctttgtatgcattgatgcattcatacgcacttggatcgttcatcgattttactgttcttgttcagGAATTCACAACCACGGTTTCAGTTTATCGTAATGAATCGCCGGAATACAG

Basic information

species Glycine max
transcript GLYMA03G35640.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298164162|gb|HO013807.1|HO013807
EST:     AGTCGCAAGGATGTTGAAGGATCTCTCTTCGTTGTCAAGAG                         GAATTCACAACCACGGTTTCAGTTTATCGTAATGAATCGCCGGAATACAG
genomic: AGTCGCAAGGATGTTGAAGGATCTCTCTTCGTTGTCAAGAGgtgaggtcat ... tcttgttcagGAATTCACAACCACGGTTTCAGTTTATCGTAATGAATCGCCGGAATACAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgatgcattcatacgcacttggatcgttcatcgattttactgttcttgttcagGAATTCACAACCACGGTTTCAGTTTATCGTAATGAATCGCCGGAATACAG
 cattgat  putative branch site (score: 4)
                                            ttcttgttc  putative PPT
                                   attttact  TA-rich tract