Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatatctgatatctcaagtttttgtattgtttcttagacaatgattttcttacattatttgtgagaaaattatactgaaatacttggtgttttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACCAGTTTATGAATTTAGTTGTTGACAACACTGTGGAAGTGAATGGCAATGA

Basic information

species Glycine max
transcript GLYMA03G35490.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G35490.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os03g29740.1 (Oryza sativa), 3'ss of exon 2
-----aatatc--tgatatctcaagtttttgtattgtttcttagacaatgattttcttacattatttgtgagaaaattatactgaaatacttggtgttttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACCAGTTTATGAATTTAGTTGTTGACAACACTGTGGAAGTGAATGGCAATGA
      || |   ||| ||     ||||   ||||||   ||  ||| |||        | ||| | ||       | | ||||      ||    |||| || ||||||||||||||||||| ||  |  |||||||||| |||||||| ||||| |||||||||||||| || || |||||||| || || || ||||| |||||
accttgatcttggtgaaatgatgggtttcaatattgtactttttacattgaggagtcctctttagt-gtctagttgtaacactg------ttcaacttttttttcagTCAAGCTGAATGCAAACCGTGTAATTGTTGGTACGCTCCGTGGATTCGATCAGTTTATGAATTTGGTGGTGGACAACACGGTAGAGGTCAATGGAAATGA

upper sequence: GLYMA03G35490.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G083642_T02 (Zea mays), 3'ss of exon 2
-aatatctgatatctcaagtttttgtattgtttc-ttagacaatgattttcttacattatttgtgagaaaattatactgaaatacttggtgttttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACCAGTTTATGAATTTAGTTGTTGACAACACTGTGGAAGTGAATGGCAATGA
   ||| |  | | | |  | || |   || | | |||||  |  |||||   |    | || | ||    ||||       |  || ||   ||  | |||| ||| |||||||||| ||  | ||| | || || || ||||| ||||||||||| |||||| | || || |||||||||||||| || ||||| |||||
ttttatttattttttta--tcttggagatgctacattagattaatattttgccattgaaattataagtggcttatgtgtgcgttgtttgtccatttcttcagTTAAGATGAATGCAAACCGTGTTGTTATCGGCACACTTCGTGGGTTCGACCAGTTCATGAATCTGGTGGTGGACAACACTGTGGAGGTCAATGGAAATGA

upper sequence: GLYMA03G35490.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G11500.1 (Arabidopsis thaliana), 3'ss of exon 2
aatatctgatatctcaagtttttgtattgtttcttagacaatgattttcttacattattt-gtgagaaaattatactgaaatacttggtgttttct----tgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACCAGTTTATGAATTTAGTTGTTGACAACACTGTGGAAGTGAATGGCAATGA
    |   || |  | ||  ||||| |||||  | |     |  |    |   ||  |   ||||     || |       |  ||| ||||  |     || ||| ||||| ||||| ||  | ||||||||||| |||||||||||||| || ||||| |||||| | ||||| || |||||||| ||||| |||||  ||||
---ttagaattttactagactttgt-ttgtta-tcatgtttttgtaacttggtatggtcaagtgaagttcttgtctgcttttttttgttgttacccccaatgtagTTAAGCTTAATGCCAACAGAATGGTTGTTGGAACTCTCCGTGGCTTTGATCAGTTCATGAATCTTGTTGTGGATAACACTGTTGAAGTCAATGGTGATGA

upper sequence: GLYMA03G35490.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0007g03130.t01 (Vitis vinifera), 3'ss of exon 2
-aatatctgatatctcaagttttt-gtattgtttcttagacaatgattttcttacattatttgtgagaaaattatactgaaatacttggtgttttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACCAGTTTATGAATTTAGTTGTTGACAACACTGTGGAAGTGAATGGCAATGA
 |    ||  |   | | |  ||  |||||  ||  |||| | | || |   |  |  |  | | ||||  | | | | |||    || | || | ||||||||||| |||||||||| || ||||| ||||| ||||| ||||| || |||||||| |||||  | || || ||||||||||||||||||||||| |||||
aagccccttgtgcatgatgcattaagtattagttgctagagactaatatatctgaaaaaact-tcagaacgtgaaatttaaactggtgat-ttatattgcagTCAAGTTGAATGCAAACCGGATGGTGGTTGGAACTCTTCGTGGGTTTGACCAGTTCATGAACCTGGTGGTGGACAACACTGTGGAAGTGAATGGAAATGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193557666|gb|FK511979.1|FK511979
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|254319446|gb|GR830697.1|GR830697
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|208264145|gb|GE062529.1|GE062529
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|192333496|gb|FK024025.1|FK024025
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|10255304|gb|BE823070.1|BE823070
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|7041610|gb|AW471504.1|AW471504
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|192296352|gb|FG991590.1|FG991590
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|14126515|gb|BG790953.1|BG790953
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|9901050|gb|BE610018.1|BE610018
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|207692585|gb|GD674838.1|GD674838
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|193657862|gb|FK601497.1|FK601497
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|151409296|gb|EV279104.1|EV279104
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|193357009|gb|FK323537.1|FK323537
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|208023507|gb|GD821178.1|GD821178
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCCTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|193493544|gb|FK460994.1|FK460994
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGTTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|16347640|gb|BI973235.1|BI973235
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|7028229|gb|AW458012.1|AW458012
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCCGTGGCTTCGAC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCT-CCGTGGCTTCGAC
EST: gi|151393472|gb|EV263347.1|EV263347
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|193321395|gb|FK285223.1|FK285223
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|26059780|gb|CA802694.1|CA802694
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|193397176|gb|FK363280.1|FK363280
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|208168402|gb|GD966922.1|GD966922
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|19268867|gb|BM885123.1|BM885123
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|213618034|gb|DB963667.1|DB963667
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|208152583|gb|GD946566.1|GD946566
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|31468284|gb|CD410312.1|CD410312
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCGAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|192309180|gb|FG999099.1|FG999099
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|192333495|gb|FK024024.1|FK024024
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|193691028|gb|FK632757.1|FK632757
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|14258516|gb|BG881424.1|BG881424
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|14990669|gb|BI316342.1|BI316342
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|19269146|gb|BM885402.1|BM885402
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|208096942|gb|GD894217.1|GD894217
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|208319047|gb|GE112494.1|GE112494
EST:     TGAAGAAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: TGAAGAAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|192328013|gb|FK021759.1|FK021759
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|151404612|gb|EV274426.1|EV274426
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|193698140|gb|FK636691.1|FK636691
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|10252902|gb|BE820668.1|BE820668
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|208269010|gb|GE068605.1|GE068605
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|151409574|gb|EV279382.1|EV279382
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|213593675|gb|DB971697.1|DB971697
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|208308758|gb|GE104580.1|GE104580
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAGTCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|207800148|gb|GD771121.1|GD771121
EST:     AAGTACATGGATAAGAAGCTTCAGA                         TCAAGCTGAACGCTAATCGCATGGTTGTTGGTACTCCCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|193661550|gb|FK604478.1|FK604478
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|193612302|gb|FK560933.1|FK560933
EST:     AAGTACATGGACAAGGAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|298184568|gb|HO029781.1|HO029781
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|19269379|gb|BM885635.1|BM885635
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|193572056|gb|FK529605.1|FK529605
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|298177502|gb|HO023635.1|HO023635
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCACATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|208209620|gb|GE004339.1|GE004339
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
EST: gi|19053330|gb|BM731997.1|BM731997
EST:     AAGTACATGGACAAGAAGCTTCAGA                         TCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC
genomic: AAGTACATGGACAAGAAGCTTCAGAgtaagtttga ... tttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcttacattatttgtgagaaaattatactgaaatacttggtgttttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACCAGTTTATGAATTTAGTTGTTGACAACACTGTGGAAGTGAATGGCAATGA
 ttcttac  putative branch site (score: 2)
                                          tgttttctt  putative PPT
        attatttgtgagaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
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aatatctgatatctcaagtttttgtattgtttcttagacaatgattttcttacattatttgtgagaaaattatactgaaatacttggtgttttcttgcagTCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACCAGTTTATGAATTTAGTTGTTGACAACACTGTGGAAGTGAATGGCAATGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttggtg