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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattagcactaaatgttccatgtgaatgatgttgctatatattaaaaatatactataactgaaccgtactgatgatgtgattgtgaatttggaatcattctgaatcattttttttttgtgtgtggctgaataatacaaatgcagGAGTTGGTGCAGCTTGAATGCCAAAGATGGGCAAGCAAAGGGGTGAACATAAAGTATGAGGTTAGGGACAATAGGAATGGGTACAAAGCAGGGGCTCTCA

Basic information

species Glycine max
transcript GLYMA03G34800.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G34800.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0007g03990.t01 (Vitis vinifera), 3'ss of exon 2
gtaaattagcactaaatgttccatgtgaatgatgttgctatatattaaaaatatactataactgaaccgtactgatgatgtgattgtgaatttggaatcattctgaatcattttttttttgtgtgtggctgaataatacaaatgcagGAGTTGGTGCAGCTTGAATGCCAAAGATGGGCAAGCAAAGGGGTGAACATAAAGTATGAGGTTAGGGACAATAGGAATGGGTACAAAGCAGGGGCTCTCA
                                                                             ||     |   | | |  || ||||| ||        | |  |     |   || || | | |||||||||| |||||| |||| ||||| || |||||||||||||||||  | ||||| ||||| ||| | ||  |||| || ||||||||||||||||| |||||||
---------------------------------------------------------------------------gtatccacatcaaattctcaaaacattccgatctgggggtgtcctaacaat--ttggatgaaaaaaatgcagGACTTGGTGGAGCTAGAATGTCAGAGATGGGCAAGCAAAGGCATAAACATCAAGTACGAGATAAGAAACAACAGAAATGGGTACAAAGCAGGAGCTCTCA

upper sequence: GLYMA03G34800.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ35401 (Selaginella moellendorffii), 3'ss of exon 2
gtaaattagcactaaatgttccatgtgaatgatgttgctatatattaaaaatatactataactgaaccgtactgatgatgtgattgtgaatttggaatcattctgaatcattttttttttgtgtgtggctgaataatacaaatgcagGAGTTGGTGCAGCTTGAATGCCAAAGATGGGCAAGCAAAGGGGTGAACATAAAGTATGAGGTTAGGGACAATAGGAATGGGTACAAAGCAGGGGCTCTCA
                                                                              | ||  |  ||  ||  |  | |  || |  | | | |   ||  ||||  || ||  |  | | |||| |  ||||| |||| || ||||| |||||||| ||||||||||||||||| ||||||||| |  ||||||| |||||||| ||||| || ||||| ||||
-----------------------------------------------------------------------------gtttgccta-gagcttcca--cctcttgga--actatgtggatggatgtgattggatgttttacacgcagAATCTGGTGGAGCTCGAGTGCCAGAGATGGGCGAGCAAAGGGGTGAACATCAAGTATGAGATCCGGGACAACAGGAATGGCTACAAGGCGGGGGCGCTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggaatcattctgaatcattttttttttgtgtgtggctgaataatacaaatgcagGAGTTGGTGCAGCTTGAATGCCAAAGATGGGCAAGCAAAGGGGTGAACATAAAGTATGAGGTTAGGGACAATAGGAATGGGTACAAAGCAGGGGCTCTCA
       attctgaatcattttt  TA-rich tract