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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgagttttcatcgtttattcgcttttcatggttttagttgtatctgatttgtaaatggaaaatagttaggaagggtgctgttagtcgtacaattagtactttctacttactctgatgttgtgaaatgtgaattgttcaaattttccaaatatgccgatcttagttattttttctgctctttataaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAAT

Basic information

species Glycine max
transcript GLYMA03G34540.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G34540.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G53120.1 (Arabidopsis thaliana), 3'ss of exon 2
gtttgagttttcatcgtttattcgcttttcatggttttagttgtatctgatttgtaaatggaaaatagttaggaagggtgctgttagtcgtacaattagtactttctacttactctgatgttgtgaaa-tgtgaattgttcaaattttccaaatatgccgatcttagttattttttctgctctttataaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAAT
                                                                                               || |  |||| |  ||  |    |||| |     | |  | ||| |   ||||    || |     | ||   || | |   | || ||       || || || |||||  |  |||||||| | |||||||||||||||||||| || ||| |||  || ||||| ||||||||  | || ||||||
----------------------------------------------------------------------------------------------gtttgctctttttgtttgtttgtttgttatccttctctcgagtgtgcgttttttttgtatgtcttctttttgaatagtgta--tacttttc------tgtagCGTGGATGAACTCAGGAAGCTTCTCTCTGACAAAGATGCGTATCAGCAATTTCTGCTCTCTCTTGACCAGGTCAAAGTCCAGAATAAT

upper sequence: GLYMA03G34540.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G36680.1 (Arabidopsis thaliana), 3'ss of exon 2
gtttgagttttcatcgtttattcgcttttcatggttttagttgtatctgatttgtaaatggaaaatagttaggaagggtgctgttagtcgtacaattagtactttctacttactctgatgttgtgaaatgtgaattgttcaaattttccaaatatgccgatcttagttattttttctgctctttataaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAAT
                                                                               | | | |       ||||  |  | | |||||      ||||| |    | ||  ||  ||  |||   ||  ||||  | ||||    |  | || |||||||          ||||| |||||| |  |||||||| | |||||||| |||||||||||||||||| |||| |||||||| |||||||  |||||||| |||
-------------------------------------------------------------------------------gatat-ataaagggaattgat-ttctgtacttgtcggtatgttatcttgtatgc-ttactcttattactcatttatgatgttctt---caaatgttttgctctt----------agTGTGGATGAGCTTAGGAAGCTTCTCTCTGACAAGGATGCGTATCAACAGTTTCTGCACTCGCTTGACCAGGTCACTATTCAAAACAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37997616|gb|CF809205.1|CF809205
EST:     GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAG                         TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
genomic: GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGgtttgagttt ... taaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
EST: gi|213610992|gb|DB970919.1|DB970919
EST:     GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAG                         TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
genomic: GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGgtttgagttt ... taaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
EST: gi|10848192|gb|BF070735.1|BF070735
EST:     GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAG                         TGTTGATGAGTTGCGGAAGCTCTTATCTGACAAAGATGCGTATCAACAGTT
genomic: GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGgtttgagttt ... taaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
EST: gi|151395409|gb|EV265286.1|EV265286
EST:     GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAG                         TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
genomic: GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGgtttgagttt ... taaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
EST: gi|5678132|gb|AI939262.1|AI939262
EST:     GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAG                         TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
genomic: GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGgtttgagttt ... taaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
EST: gi|298167079|gb|HO010518.1|HO010518
EST:     GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAG                         TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
genomic: GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGgtttgagttt ... taaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
EST: gi|254348136|gb|GR851815.1|GR851815
EST:     GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAG                         TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
genomic: GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGgtttgagttt ... taaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
EST: gi|27427318|gb|CA938838.1|CA938838
EST:     GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAG                         TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
genomic: GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGgtttgagttt ... taaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
EST: gi|192328158|gb|FK020419.1|FK020419
EST:     GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAG                         TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
genomic: GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGgtttgagttt ... taaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattttccaaatatgccgatcttagttattttttctgctctttataaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAAT
                             ttttttctgctcttta  CT-rich tract
                   atcttagttatttttt  TA-rich tract