1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctacctttattgtactattgtactcctattaggtagaatctatatcgaatatctttattggtaaactaaccagtatcagtattctggatctactgttaagAAAAATTGGCTAGACTGAAGCAAGCCAAAGAAGAGGCTGAAAAGGAAATTGCCGAGTATAGGGCTCAGTTGGAGTACGAGTTTCAAAAGAAAGTGTCACA
species | Glycine max |
transcript | GLYMA03G33790.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTGGCTGCTGAACAAGAAGCGCAAAGAATTGTCAATGCTGCNNNNNNNN NNNNNTTGGCTAGACTGAAGCAAGCCAAAGAAGAGGCTGAAAAGGAAATTGEST: gi|208333810|gb|GE127807.1|GE127807
genomic: GCTGGCTGCTGAACAAGAAGCGCAAAGAATTGTCAATGCTGCAAAAAATGgtatttccta ... tactgttaagAAAAATTGGCTAGACTGAAGCAAGCCAAAGAAGAGGCTGAAAAGGAAATTG
EST: GCTGGCTGCTGAACAAGAAGCGCAAAGAATTGTCAATGCTGCAAAAAATG AAAA-TTGGCTAGACTGAAGCAAGCCAAAGAAGAGGCTGAAAAGGAAATTGEST: gi|31307211|gb|CD392414.1|CD392414
genomic: GCTGGCTGCTGAACAAGAAGCGCAAAGAATTGTCAATGCTGCAAAAAATGgtatttccta ... tactgttaagAAAAATTGGCTAGACTGAAGCAAGCCAAAGAAGAGGCTGAAAAGGAAATTG
EST: TGGCTGCTGAACAAGAAGCGCAAAGAATTGTCAAATGCTGCAATAAAATG AAAAATTGGCTAGACTGAAGCAAGCCAAAGAAGAGGCTGAAAAGGAAATT
genomic: TGGCTGCTGAACAAGAAGCGCAAAGAATTGTC-AATGCTGCAA-AAAATGgtatttccta ... tactgttaagAAAAATTGGCTAGACTGAAGCAAGCCAAAGAAGAGGCTGAAAAGGAAATT
cgaatatctttattggtaaactaaccagtatcagtattctggatctactgttaagAAAAATTGGCTAGACTGAAGCAAGCCAAAGAAGAGGCTGAAAAGGAAATTGCCGAGTATAGGGCTCAGTTGGAGTACGAGTTTCAAAAGAAAGTGTCACA
aactaac putative branch site (score: 1)
atctttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctacctttattgtactattgtactcctattaggtagaatctatatcgaatatctttattggtaaactaaccagtatcagtattctggatctactgttaagAAAAATTGGCTAGACTGAAGCAAGCCAAAGAAGAGGCTGAAAAGGAAATTGCCGAGTATAGGGCTCAGTTGGAGTACGAGTTTCAAAAGAAAGTGTCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
ctacctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attctgg