Sequence
atgc intronic sequence ATGC exonic sequencegtatattggtcagattttgatggattttaagaattttgggtttgcttcatggttcatgagaggtttcttgttgcgtgtagGACCCCATAAAGTCTATTCACTTCAGTAACTCGAATCCTGTGTGCCACACGTTTGATCAGGATGCTAAGGATGGGCATGATTTGCTCATTGGTTTGAACT
Basic information
species | Glycine max |
transcript | GLYMA03G33740.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G33740.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G53390.1 (Arabidopsis thaliana), 3'ss of exon 2
-------------------gtatattggtcag--attttgatggattttaagaattttgggtttgcttcatggttcatgag--aggtttcttgttgcgtgtagGACCCCATAAAGTCTATTCACTTCAGTAACTCGAATCCTGTGTGCCACACGTTTGATCAGGATGCTAAGGATGGGCATGATTTGCTCATTGGTTTGAACT
|| | | || |||| | || | | | |||| | |||| || | ||| ||| ||| || ||||||| || |||||||||| || |||||||| || || ||| |||| || | ||||||| ||||||||||||||||||||| || || ||||| |||| |
gtaatttcttcttttctttgttttccttttagtgatttggctgtaatgttctgttttttgttttgttttggaagtaatggtttaggaaacttctttgatgtagGATCCAGTAAAGTCTATCCATTTCAGTAATTCAAACCCTATGTGTCATGCTTTTGATCCGGATGCTAAGGATGGGCATGACTTACTTATTGGGCTGAATT
upper sequence: GLYMA03G33740.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0040g01960.t01 (Vitis vinifera), 3'ss of exon 2
----------gtatattggtca-gattttgatggattttaagaattttgggtttgcttcatggttcatgagaggtttcttgttgcgtgtagGACCCCATAAAGTCTATTCACTTCAGTAACTCGAATCCTGTGTGCCACACGTTTGATCAGGATGCTAAGGATGGGCATGATTTGCTCATTGGTTTGAACT
|| | ||| | |||| || || | | ||| ||| | | ||| | |||||||||| || || ||||||| |||||||||||||| || || ||||| ||||||||||| || || | ||||| | ||||||||||||||| ||||||||||| ||||| ||||| |
gtaatttgatgttttctggctgcggttttaatcaataattcatgtcttgcgttggaat--tggattttgagaggtttgttttttaatgtagGATCCCATAAAGTCTATACATTTTAGTAATTCGAATCCTGTTTGTCATGCATTTGACCCGGATGCTAAGGATGGACATGATTTGCTTATTGGGTTGAATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttaagaattttgggtttgcttcatggttcatgagaggtttcttgttgcgtgtagGACCCCATAAAGTCTATTCACTTCAGTAACTCGAATCCTGTGTGCCACACGTTTGATCAGGATGCTAAGGATGGGCATGATTTGCTCATTGGTTTGAACT
tttcttgtt CT-rich tract
aatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatattggtcagattttgatggattttaagaattttgggtttgcttcatggttcatgagaggtttcttgttgcgtgtagGACCCCATAAAGTCTATTCACTTCAGTAACTCGAATCCTGTGTGCCACACGTTTGATCAGGATGCTAAGGATGGGCATGATTTGCTCATTGGTTTGAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG