1 5' 3' | 2 5' 3' | 3 5' 3' |
...atattttctgtcctcccccctttaagttgcgacaatttcctgacattcacttttcataacagcgatttactaaaattgtgcttaaaatctgtgttctcagGAAATATTGGAAGGGGTAACTGACATTGACCTGGTGGTCAATCTGAAGCTCCAAGAAGAAGCACTGCTTGCAAAATGCCTTGGTAGAAGAATTTGCAATC
species | Glycine max |
transcript | GLYMA03G33390.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATGGTTTTCCACGAACAATAAAGCAAGCG GAAATATTGGAAGGGGNNNNTGACATTGATCTGGTGGTCAANCTGAANNNNEST: gi|16345511|gb|BI971106.1|BI971106
genomic: GATGGTTTTCCACGAACAATAAAGCAAGCGgtgagtattg ... gtgttctcagGAAATATTGGAAGGGGTAACTGACATTGACCTGGTGGTCAATCTGAAGCTC
EST: GAGAATCGGGATTTATTCTTGATGGTTTTCCACGAACAATAAAGCAAGCG GAAATATTGGAAGGGGTAACTGACATTGACCTGGTGGTCAATCTGAAGCTCEST: gi|6914606|gb|AW396136.1|AW396136
genomic: GAGAATCGGGATTTATTCTTGATGGTTTTCCACGAACAATAAAGCAAGCGgtgagtattg ... gtgttctcagGAAATATTGGAAGGGGTAACTGACATTGACCTGGTGGTCAATCTGAAGCTC
EST: GAGAATCGGGATTTATTCTTGATGGTTTTCCACGAACAATAAAGCAAGCG GAAATATTGGAAGGGGTAACTGACATTGACCTGGTGGTCAATCTGAAGCTCEST: gi|10252826|gb|BE820592.1|BE820592
genomic: GAGAATCGGGATTTATTCTTGATGGTTTTCCACGAACAATAAAGCAAGCGgtgagtattg ... gtgttctcagGAAATATTGGAAGGGGTAACTGACATTGACCTGGTGGTCAATCTGAAGCTC
EST: GAGAATCGGGATTTATTCTTGATGGTTTTCCACGAACAATAAAGCAAGCG GAAATATTGGAAGGGGTAACTGACATTGACCTGGTGGTCAATCTGAAGCTCEST: gi|298173011|gb|HO020010.1|HO020010
genomic: GAGAATCGGGATTTATTCTTGATGGTTTTCCACGAACAATAAAGCAAGCGgtgagtattg ... gtgttctcagGAAATATTGGAAGGGGTAACTGACATTGACCTGGTGGTCAATCTGAAGCTC
EST: GAGAATCGGGATTTATTCTTGATGGTTTTCCACGAACAATAAAGCAAGCG GAAATATTGGAAGGGGTAACTGACATTGACCTGGTGGTCAATCTGAAGCTCEST: gi|254324726|gb|GR834151.1|GR834151
genomic: GAGAATCGGGATTTATTCTTGATGGTTTTCCACGAACAATAAAGCAAGCGgtgagtattg ... gtgttctcagGAAATATTGGAAGGGGTAACTGACATTGACCTGGTGGTCAATCTGAAGCTC
EST: GAGAATCGGGATTTATTCTTGATGGTTTTCCACGAACAATAAAGCAAGCG GAAATATTGGAAGGGGTAACTGACATTGACCTGGTGGTCAATCTGAAGCTCEST: gi|120530929|gb|EH259062.1|EH259062
genomic: GAGAATCGGGATTTATTCTTGATGGTTTTCCACGAACAATAAAGCAAGCGgtgagtattg ... gtgttctcagGAAATATTGGAAGGGGTAACTGACATTGACCTGGTGGTCAATCTGAAGCTC
EST: GAGAATCGGGATTTATTCTTGATGGTTTTCCACGAACAATAAAGCAAGCG GAAATATTGGAAGGGGTAACTGACATTGACCTGGTGGTCAATCTGAAGCTCEST: gi|209697267|gb|BW675478.1|BW675478
genomic: GAGAATCGGGATTTATTCTTGATGGTTTTCCACGAACAATAAAGCAAGCGgtgagtattg ... gtgttctcagGAAATATTGGAAGGGGTAACTGACATTGACCTGGTGGTCAATCTGAAGCTC
EST: GAGAATCGGGATTTATTCTTGATGGTTTTCCACGAACAATAAAGCAAGCG GAAATATTGGAAGGGGTAACTGACATTGACCTGATGGTCAATCTGAAGCTCEST: gi|15663261|gb|BI700632.1|BI700632
genomic: GAGAATCGGGATTTATTCTTGATGGTTTTCCACGAACAATAAAGCAAGCGgtgagtattg ... gtgttctcagGAAATATTGGAAGGGGTAACTGACATTGACCTGGTGGTCAATCTGAAGCTC
EST: GAGAATCGGGATTTATTCTTGATGGTTTTCCACGAACAATAAAGCAAGCG GAAATATTGGAAGGGGTAACTGACATTGACCTGGTGGTCAATCTGAAGCTCEST: gi|8285320|gb|BE022879.1|BE022879
genomic: GAGAATCGGGATTTATTCTTGATGGTTTTCCACGAACAATAAAGCAAGCGgtgagtattg ... gtgttctcagGAAATATTGGAAGGGGTAACTGACATTGACCTGGTGGTCAATCTGAAGCTC
EST: GAGAATCGGGATTTATTCTTGATGGTTTTCCACGAACAATAAAACAAGCG GAAATATTGGAAGGGGTAACTGACATTGACCTGGTGGTGAATCTGAAGCTCEST: gi|254315931|gb|GR825740.1|GR825740
genomic: GAGAATCGGGATTTATTCTTGATGGTTTTCCACGAACAATAAAGCAAGCGgtgagtattg ... gtgttctcagGAAATATTGGAAGGGGTAACTGACATTGACCTGGTGGTCAATCTGAAGCTC
EST: GAGAATCGGGATTTATTCTTGATGGTTTTCCACGAACAATAAAGCAAGCG GAAATATTGGAAGGGGTAACTGACATTGACCTGGTGGTCAATCTGAAGCTC
genomic: GAGAATCGGGATTTATTCTTGATGGTTTTCCACGAACAATAAAGCAAGCGgtgagtattg ... gtgttctcagGAAATATTGGAAGGGGTAACTGACATTGACCTGGTGGTCAATCTGAAGCTC
ttcacttttcataacagcgatttactaaaattgtgcttaaaatctgtgttctcagGAAATATTGGAAGGGGTAACTGACATTGACCTGGTGGTCAATCTGAAGCTCCAAGAAGAAGCACTGCTTGCAAAATGCCTTGGTAGAAGAATTTGCAATC
tactaaa putative branch site (score: 1)
tgttctc putative PPT
atttactaaaattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattttctgtcctcccccctttaagttgcgacaatttcctgacattcacttttcataacagcgatttactaaaattgtgcttaaaatctgtgttctcagGAAATATTGGAAGGGGTAACTGACATTGACCTGGTGGTCAATCTGAAGCTCCAAGAAGAAGCACTGCTTGCAAAATGCCTTGGTAGAAGAATTTGCAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC