1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cccaaactggtgtttagttcgtctttgaggggtgatgtatcatacagttccagtagttaagtaatgatggccttattgtttctggaaaccatttccgcagAGTTCGAGGCGTAGATATGAAGAATGATTTCGCCTTTGTTGTAAGTTGTCACCCTTTCTGTCTTTATGTATTTCTTTTTTACTTCAATTTCTCCTCATGC
species | Glycine max |
transcript | GLYMA03G33270.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGAGGACTCGTTCCCGTGACCTGGAGCGTGTCTTCAGCAGATATGGAAG AGTTCGAGGCGTAGATATGAAGAAEST: gi|193440148|gb|FK408535.1|FK408535
genomic: TCGAGGACTCGTTCCCGTGACCTGGAGCGTGTCTTCAGCAGATATGGAAGgtaattttcc ... atttccgcagAGTTCGAGGCGTAGATATGAAGAA
EST: TCGAGGACTCGTTCCCGTGACCTGGAGCGTGTCTTCAGCAGATATGGAAG AGTTCGAGGCGTAGATATGAAGAATGATTTCGCTTTTGTTG
genomic: TCGAGGACTCGTTCCCGTGACCTGGAGCGTGTCTTCAGCAGATATGGAAGgtaattttcc ... atttccgcagAGTTCGAGGCGTAGATATGAAGAATGATTTCGCCTTTGTTG
agttccagtagttaagtaatgatggccttattgtttctggaaaccatttccgcagAGTTCGAGGCGTAGATATGAAGAATGATTTCGCCTTTGTTGTAAGTTGTCACCCTTTCTGTCTTTATGTATTTCTTTTTTACTTCAATTTCTCCTCATGC
ccatttcc CT-rich tract
ttaagtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccaaactggtgtttagttcgtctttgaggggtgatgtatcatacagttccagtagttaagtaatgatggccttattgtttctggaaaccatttccgcagAGTTCGAGGCGTAGATATGAAGAATGATTTCGCCTTTGTTGTAAGTTGTCACCCTTTCTGTCTTTATGTATTTCTTTTTTACTTCAATTTCTCCTCATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC