1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...taagtgtttacggagaaatttaacaaatctgagctttagtttttgtttttatcattgacgagctcgttattgtttcttgaattaacgcttttcttcatagATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGAGAATTTACATGGGAGGCATAG
species | Glycine max |
transcript | GLYMA03G33080.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAG ATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGAGEST: gi|208205313|gb|GE004072.1|GE004072
genomic: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAGgtagttcttc ... ttcttcatagATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGAG
EST: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAG ATGTGTGGCAATGGAGTTCGATGCTTTGCCAAATTTGTTTCTCAGCTTGAGEST: gi|298187329|gb|HO034478.1|HO034478
genomic: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAGgtagttcttc ... ttcttcatagATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGAG
EST: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAG ATGTGTGGCAATGGAGTGCGATGCTTTGCCAEST: gi|120532038|gb|EH260171.1|EH260171
genomic: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAGgtagttcttc ... ttcttcatagATGTGTGGCAATGGAGTGCGATGCTTTGCCA
EST: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAG ATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGAGEST: gi|298195843|gb|HO044234.1|HO044234
genomic: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAGgtagttcttc ... ttcttcatagATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGAG
EST: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTTGTGAGCCTGAG ATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGEST: gi|193479421|gb|FK444206.1|FK444206
genomic: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAGgtagttcttc ... ttcttcatagATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAG
EST: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAG ATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGAGEST: gi|298175668|gb|HO015187.1|HO015187
genomic: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAGgtagttcttc ... ttcttcatagATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGAG
EST: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAG ATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGEST: gi|5753437|gb|AI960724.1|AI960724
genomic: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAGgtagttcttc ... ttcttcatagATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTG
EST: GCACCGATTATACCATGAGGANTTTTAACTCTGATGGTAGTGAGCCTGAG ATGTGTGGNCA-TGGAGTGCGATGCTTTGCCAAATCTGTTTCTCAGCTTGAEST: gi|18041357|gb|BM309651.1|BM309651
genomic: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAGgtagttcttc ... ttcttcatagATGTGTGG-CAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGA
EST: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAG ATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGAGEST: gi|9986785|gb|BE660893.1|BE660893
genomic: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAGgtagttcttc ... ttcttcatagATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGAG
EST: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAG ATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGGTTCTCAGCTTGAGEST: gi|298194658|gb|HO043130.1|HO043130
genomic: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAGgtagttcttc ... ttcttcatagATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGAG
EST: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAG ATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGAGEST: gi|208194881|gb|GD989438.1|GD989438
genomic: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAGgtagttcttc ... ttcttcatagATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGAG
EST: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAG ATGTGTGGCAATGGGGTGCGATGCTEST: gi|298189982|gb|HO032103.1|HO032103
genomic: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAGgtagttcttc ... ttcttcatagATGTGTGGCAATGGAGTGCGATGCT
EST: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAG ATGTGTGGCAATGGAEST: gi|298175599|gb|HO015118.1|HO015118
genomic: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAGgtagttcttc ... ttcttcatagATGTGTGGCAATGGA
EST: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAG ATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGAGEST: gi|298169469|gb|HO020829.1|HO020829
genomic: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAGgtagttcttc ... ttcttcatagATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGAG
EST: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAG ATGTGTGGCAATGGAGTGCGATGCTTTGCEST: gi|192298876|gb|FG987621.1|FG987621
genomic: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAGgtagttcttc ... ttcttcatagATGTGTGGCAATGGAGTGCGATGCTTTGC
EST: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAG ATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGAG
genomic: GCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAGgtagttcttc ... ttcttcatagATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGAG
tttttatcattgacgagctcgttattgtttcttgaattaacgcttttcttcatagATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGAGAATTTACATGGGAGGCATAG
aattaac putative branch site (score: 2)
cgcttttcttc CT-rich tract
ttattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagtgtttacggagaaatttaacaaatctgagctttagtttttgtttttatcattgacgagctcgttattgtttcttgaattaacgcttttcttcatagATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGAGAATTTACATGGGAGGCATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - -aacaaatc