1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgattgattcatctattcattttttatatataaatatataagagtggttgatgctctttggagctgaatagcagattattttctttctttgctgtttcagAAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT
species | Glycine max |
transcript | GLYMA03G33000.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCAAGACGAGCTTCACCTTGCGCCG AAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACTEST: gi|193353901|gb|FK321657.1|FK321657
genomic: CCAAGACGAGCTTCACCTTGCGCCGgtgagtttct ... gctgtttcagAAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT
EST: CCAAGACGAGCTTCACCTTGCGCCG AAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACTEST: gi|193656797|gb|FK606713.1|FK606713
genomic: CCAAGACGAGCTTCACCTTGCGCCGgtgagtttct ... gctgtttcagAAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT
EST: CCAAGACGAGCTTCACCTTGCGCCG AAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACTEST: gi|27446381|gb|CA953504.1|CA953504
genomic: CCAAGACGAGCTTCACCTTGCGCCGgtgagtttct ... gctgtttcagAAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT
EST: CCAAGACGAGCTTCACCTTGCGCCG AAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACTEST: gi|5510301|gb|AI856743.1|AI856743
genomic: CCAAGACGAGCTTCACCTTGCGCCGgtgagtttct ... gctgtttcagAAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT
EST: GCTTCACCTTGCGCCG AAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACTEST: gi|7925031|gb|AW831057.1|AW831057
genomic: GCTTCACCTTGCGCCGgtgagtttct ... gctgtttcagAAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT
EST: AGACGAGCTTCACCTTGCGCCG AAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACTEST: gi|298199436|gb|HO042799.1|HO042799
genomic: AGACGAGCTTCACCTTGCGCCGgtgagtttct ... gctgtttcagAAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT
EST: CCAAGACGAGCTTCACCTTGCGCTG AAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACTEST: gi|192296495|gb|FG989111.1|FG989111
genomic: CCAAGACGAGCTTCACCTTGCGCCGgtgagtttct ... gctgtttcagAAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT
EST: CCAAGACGAGCTTCACCTTGCGCCG AAGGGCCACAGATGGTTGAAACTGATATGGATGCCGAAACTEST: gi|8827754|gb|BE211484.1|BE211484
genomic: CCAAGACGAGCTTCACCTTGCGCCGgtgagtttct ... gctgtttcagAAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT
EST: CCAAGACGAGCTTCACCTTGCGCCG AAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACTEST: gi|7588509|gb|AW704365.1|AW704365
genomic: CCAAGACGAGCTTCACCTTGCGCCGgtgagtttct ... gctgtttcagAAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT
EST: CCAAGACGAGCTTCACCTTGCGCCG AAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACTEST: gi|9986811|gb|BE660919.1|BE660919
genomic: CCAAGACGAGCTTCACCTTGCGCCGgtgagtttct ... gctgtttcagAAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT
EST: CCAAGACGAGCTTCACCTTGCGCCG AAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACTEST: gi|192324459|gb|FK015810.1|FK015810
genomic: CCAAGACGAGCTTCACCTTGCGCCGgtgagtttct ... gctgtttcagAAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT
EST: AGACGAGCTTCACCTTGCGCCG AAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACTEST: gi|7588510|gb|AW704234.1|AW704234
genomic: AGACGAGCTTCACCTTGCGCCGgtgagtttct ... gctgtttcagAAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT
EST: CCAAGACGAGCTTCACCTTGCGCCG AAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACTEST: gi|151404690|gb|EV274504.1|EV274504
genomic: CCAAGACGAGCTTCACCTTGCGCCGgtgagtttct ... gctgtttcagAAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT
EST: CCAAGACGAGCTTCACCTTGCGCCG AAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT
genomic: CCAAGACGAGCTTCACCTTGCGCCGgtgagtttct ... gctgtttcagAAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT
ggttgatgctctttggagctgaatagcagattattttctttctttgctgtttcagAAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT
ggttgat putative branch site (score: 5)
ttattttctttctttg putative PPT
attattttctttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgattgattcatctattcattttttatatataaatatataagagtggttgatgctctttggagctgaatagcagattattttctttctttgctgtttcagAAGGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG