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...cctgatattttaaactgtctagaactatgtagaaaggaaatttatcctgtttgtgtttatcatgtgaccatttggttgcttgtacttgtttttgatctagAGACAATCGTAACAATAGAGTTTCCCTTTTTGATGGTATTGAGGAGGGTGGCATCAGAGCATCATCTGTTTACTCCTCTTCTCATGAAATTGATGAACAT
species | Glycine max |
transcript | GLYMA03G31790.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGACTGGACGATCTCGCGAGCCATGAATGCTAGACG AGACAATCGTAACAATAGAGTTTCCCTTTTTGATGGTATTGAGGAGGGTGGEST: gi|22929412|gb|BU546551.1|BU546551
genomic: AGACTGGACGATCTCGCGAGCCATGAATGCTAGACGgttagtatag ... tttgatctagAGACAATCGTAACAATAGAGTTTCCCTTTTTGATGGTATTGAGGAGGGTGG
EST: AGACTGGACGATCTCGCGAGCCATGAATGCTAGACG AGACAATCGTAACAATAGAGTTTCCCTTTTTGATGGTATTGAGGAGGGTGGEST: gi|7693452|gb|AW761544.1|AW761544
genomic: AGACTGGACGATCTCGCGAGCCATGAATGCTAGACGgttagtatag ... tttgatctagAGACAATCGTAACAATAGAGTTTCCCTTTTTGATGGTATTGAGGAGGGTGG
EST: AGACTGGACGATCTCGCGAGCCATGAATGCTAGACG AGACAATCGTAACAATAGAGTTTCCCTTTTTGATGGTATTGAGGAGGGTGGEST: gi|7286192|gb|AW598679.1|AW598679
genomic: AGACTGGACGATCTCGCGAGCCATGAATGCTAGACGgttagtatag ... tttgatctagAGACAATCGTAACAATAGAGTTTCCCTTTTTGATGGTATTGAGGAGGGTGG
EST: AGACTGGACGATCTCGCGAGCCATGAATGCTAGACG AGACAATCGTAACAATAGAGTTTCCCTTTTTGATGGTATTGAGGAGGGTGGEST: gi|17963404|gb|BM270153.1|BM270153
genomic: AGACTGGACGATCTCGCGAGCCATGAATGCTAGACGgttagtatag ... tttgatctagAGACAATCGTAACAATAGAGTTTCCCTTTTTGATGGTATTGAGGAGGGTGG
EST: AGACTGGACGATCTCGCGAGCCATGAATGCTAGACG AGACAATCGTAACAATAGAGTTTCCCTTTTTGATGGTATTGAGGAGGGTGG
genomic: AGACTGGACGATCTCGCGAGCCATGAATGCTAGACGgttagtatag ... tttgatctagAGACAATCGTAACAATAGAGTTTCCCTTTTTGATGGTATTGAGGAGGGTGG
cctgtttgtgtttatcatgtgaccatttggttgcttgtacttgtttttgatctagAGACAATCGTAACAATAGAGTTTCCCTTTTTGATGGTATTGAGGAGGGTGGCATCAGAGCATCATCTGTTTACTCCTCTTCTCATGAAATTGATGAACAT
ttttgat putative branch site (score: 4)
cttgttttt CT-rich tract
tttatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctgatattttaaactgtctagaactatgtagaaaggaaatttatcctgtttgtgtttatcatgtgaccatttggttgcttgtacttgtttttgatctagAGACAATCGTAACAATAGAGTTTCCCTTTTTGATGGTATTGAGGAGGGTGGCATCAGAGCATCATCTGTTTACTCCTCTTCTCATGAAATTGATGAACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
cctgata
- - - - - - - ctgtcta
- - - - - - - - - - - - -tatgtag
- - - - - - - - - - - - - - - - aaaggaaa
- - - - - - - - - - - - - - - - - - - - - - - - gtttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtacttg