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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaccagacacgcacttagtatgttgaacttttcacctagtaaaactcatagtaatgcttatggtttaaccaaccttaatccttattaatgtgattgcagTTTTTTCGGGCAAACAATTCCATTCACCCTTTATTCAATGGTGGAAGAACCAGTGCAACCATTGGCAATGGCACGGCTTGCTCAGGACCTAAAACTGTTG

Basic information

species Glycine max
transcript GLYMA03G31340.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207816551|gb|GD787420.1|GD787420
EST:     CAGATAGCCCTCCGATTTCACCTTCAGATGAATTCGACGATGTTGTTAAG                         TTTTTTCGGGCAAACAATTCCATTCACCCTTTATTCAATGGTGGAAGAACC
genomic: CAGATAGCCCTCCGATTTCACCTTCAGATGAATTCGACGATGTTGTTAAGgtatcatcat ... gtgattgcagTTTTTTCGGGCAAACAATTCCATTCACCCTTTATTCAATGGTGGAAGAACC
EST: gi|208067271|gb|GD862237.1|GD862237
EST:     CAGATAGCCCTCCGATTTCACCTTCAGATGAATTCGACGATGTTGTTAAG                         TTTTTTCGGGCAAACAATTCCA
genomic: CAGATAGCCCTCCGATTTCACCTTCAGATGAATTCGACGATGTTGTTAAGgtatcatcat ... gtgattgcagTTTTTTCGGGCAAACAATTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcatagtaatgcttatggtttaaccaaccttaatccttattaatgtgattgcagTTTTTTCGGGCAAACAATTCCATTCACCCTTTATTCAATGGTGGAAGAACCAGTGCAACCATTGGCAATGGCACGGCTTGCTCAGGACCTAAAACTGTTG
                                      tattaat  putative branch site (score: 2)
                              ttaatccttattaat  TA-rich tract