1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcattattttcacttcacatgattactgtgaatttaccctgtcttgtaaatttcttataaatttctaatattttgcactcggctgcatcgtgttttccagTGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAATATCTGCCCGTCCTGCCATCATGATCTTGGGAATATAAGATGTTTGGCTT
species | Glycine max |
transcript | GLYMA03G30250.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TACTTGGATGCCCTGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAG TGCCCAAATGGCCATACATTATGTEST: gi|18733465|gb|BM527622.1|BM527622
genomic: TACTTGGATGCCCCGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGgtgcagtgct ... tgttttccagTGCCCAAATGGCCATACATTATGT
EST: TACTTGGATGCCCCGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAG TGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAATEST: gi|13791160|gb|BG653751.1|BG653751
genomic: TACTTGGATGCCCCGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGgtgcagtgct ... tgttttccagTGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAAT
EST: TACTTGGATGCCCCGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAG TGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAATEST: gi|151404649|gb|EV274463.1|EV274463
genomic: TACTTGGATGCCCCGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGgtgcagtgct ... tgttttccagTGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAAT
EST: CTTGGATGCCCCGTTTTGCAAGAATTTGATGTATCCCCCAATTTCACCAG TGCCCAAATGGCCATACATTATGTTCCCATTTGTAAAGTTGAAGTCCATAEST: gi|9205254|gb|BE331478.1|BE331478
genomic: CTTGGATGCCCCG-TTTGCAAGAATTTGATGTATCCCCCAA-TTCACCAGgtgcagtgct ... tgttttccagTGCCCAAATGGCCATACATTATGTTCCCA-TTGTAAAGTTGAAGTCCATA
EST: TACTTGGATGCCCCGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAG TGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAAT
genomic: TACTTGGATGCCCCGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGgtgcagtgct ... tgttttccagTGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAAT
gtaaatttcttataaatttctaatattttgcactcggctgcatcgtgttttccagTGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAATATCTGCCCGTCCTGCCATCATGATCTTGGGAATATAAGATGTTTGGCTT
ttctaat putative branch site (score: 2)
tgttttcc putative PPT
tttcttataaatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcattattttcacttcacatgattactgtgaatttaccctgtcttgtaaatttcttataaatttctaatattttgcactcggctgcatcgtgttttccagTGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAATATCTGCCCGTCCTGCCATCATGATCTTGGGAATATAAGATGTTTGGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - cacttca
- - - - - - - - - - - -tactgtg
- - - - - - - - - - - - - - - - - - ccctgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcatc