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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtttttaacttcatgggtgtttatgtttttgtccaaaattgacaatattttgtctattttattttggtaatgtgaatttgttgtcttgtattatacttgaattgattcatttgctaattttcttttggggggtcccaaaatttggttgaattggtaatatagGTTGGATGCGCATCGAATGCTGCAATTGTTGAGAGGGAAACGACTGGTTTTTGTTGGCGATTCGCTCAATAGGAACATGTGGGAGTCTTTGATTTGCATA

Basic information

species Glycine max
transcript GLYMA03G30210.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G30210.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os06g10560.1 (Oryza sativa), 3'ss of exon 1
gtaaagtttttaacttcatgggtgtttatgtttttgtccaaaattgacaatattttgtctattttattttggtaatgtgaatttgttgt--cttgtattatacttgaattgattcatttgctaattttcttttggggggtcccaaaatttggttgaattggtaatatagGTTGGATGCGCATCGAATGCTGCAATTGTTGAGAGGGAAACGACTGGTTTTTGTTGGCGATTCGCTCAATAGGAACATGTGGGAGTCTTTGATTTGCATA
                                                                       || | |  || ||  |    |  | | |  | ||   |  |||  | | | | | ||  |        | || || | |  |    ||| ||   ||| ||| || |   |   ||| || |   | |||| |||||| |||||||||| ||||| ||||| || ||||||||||||||||| ||  || | ||||| 
-----------------------------------------------------------------------gtgaggaaaagttactagagcaggcaatcaattttggtgaatttttattcca-tcttagtgcataacatgcctaattatattc---ttgttatattagATTGAATCCAACTGATATGTTGGAGAGGCTGAGGGGGAAAAGACTGGTTTTCGTTGGTGATTCACTTAATAGGAACATGTGGGAATCCCTGGTCTGCATC

upper sequence: GLYMA03G30210.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os02g53380.1 (Oryza sativa), 3'ss of exon 1
gtaaagtttttaacttcatgggtgtttatgtttttgtccaaaattgacaatattttgtctattttattttggtaatgtgaatttgttgtcttgtattatacttgaattgattcatttgctaat-tttcttttggggggtcccaaaatttggttgaat--tggtaata-tagGTTGGATGCGCATCGAATGCTGCAATTGTTGAGAGGGAAACGACTGGTTTTTGTTGGCGATTCGCTCAATAGGAACATGTGGGAGTCTTTGATTTGCATA
                                                                            |||| ||     |  |  |  | |||    || ||||| ||  |  | |||| | ||      |  ||||||  |||  ||  || | |||  || ||| |  ||  |   ||| || |   | |||| |||||  | ||||| ||||| || ||||||||||| |||||||||||||| ||  || ||||||| 
----------------------------------------------------------------------------gtgagttgagactacttgagca-actctgttttattcagttcttggtgtttcatgtgacacagctgaaaattcagttccatgatgttcataacagATTGAACCCGAGTGACATGTTGGAGAGGCTGAGGGGGAAGAGGCTGGTGTTTGTCGGTGATTCGCTCAACAGGAACATGTGGGAATCCCTGGTTTGCATC

upper sequence: GLYMA03G30210.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G033805_T01 (Zea mays), 3'ss of exon 1
gtaaagtttttaacttcatgggtgtttatgtttttgtccaaaattgacaatattttgtctattttattttggtaatgtgaatttgttgtcttgtattatacttgaattgattcatttgctaattttcttttggggggtcccaaaatttggttgaattggtaatatagGTTGGATGCGCATCGAATGCTGCAATTGTTGAGAGGGAAACGACTGGTTTTTGTTGGCGATTCGCTCAATAGGAACATGTGGGAGTCTTTGATTTGCATA
                                                                  |   | ||| || |   ||      || | |    || ||||  |||||||   ||| ||  ||||     |  |||  |   |||    ||  | |  || ||| |  |       ||| || |   | ||||||| ||| ||||||| || ||||| |||||||||||||||||||||||||| ||  |  | || || 
-----------------------------------------------------------------gtgaggataaggtta--ctggaacaatgcaatg-gttttaattatttcattt--caatcttggtttgtaatttgtcaagttcatgtttg--tgtcatttcagATTGAACCCAACCGATATGTTGGAGAGGCTGAGAGGAAAAAGACTGGTGTTCGTTGGTGATTCGCTCAATAGGAACATGTGGGAATCCCTTGTGTGTATT

upper sequence: GLYMA03G30210.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G165961_T01 (Zea mays), 3'ss of exon 1
gtaaagtttttaacttcatgggtgtttatgtttttgtccaaaattgacaatattttgtctattttattttggtaatgtgaatttgttgtcttgtattatacttgaattgattcatttgctaattttcttttggggggtcccaaaatttggttgaattggtaatat-agGTTGGATGCGCATCGAATGCTGCAATTGTTGAGAGGGAAACGACTGGTTTTTGTTGGCGATTCGCTCAATAGGAACATGTGGGAGTCTTTGATTTGCATA
                  || |     | ||  ||   ||| |    |    |||||   | || | |   || ||    | || ||| | |||   |      |||  | |  | || |  |||  |||   |   |        |    ||  ||| | || | |||||| |  |   |   ||| || |   | |||| |||||  | ||||| ||||| || ||||||||||| |||||||||||||| ||  ||||||| |||
-----------------gtgagaaaaaaagtactt---caacaactgcgccgttttggtgaattcaat--agttatagttagttattggcgtgtgaca------aatgcagttctgtgttgctttattttaaagttattagttctgtcacctgtgttgcttatgttagGTTGAACCCAACTGACATGTTGGAGAGGCTGAGGGGGAAGAGGCTGGTGTTTGTCGGTGATTCGCTCAACAGGAACATGTGGGAATCCCTGATTTGTATA

upper sequence: GLYMA03G30210.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM5G843892_T01 (Zea mays), 3'ss of exon 1
gtaaagtttttaacttcatgggtgtttatgtttttgtccaaaattgacaatattttgtctattttattttggtaatgtgaatttgttgtcttgtattatacttgaattgattcatttgctaattttcttttggggggtcccaaaatttggttgaattggtaatatagGTTGGATGCGCATCGAATGCTGCAATTGTTGAGAGGGAAACGACTGGTTTTTGTTGGCGATTCGCTCAATAGGAACATGTGGGAGTCTTTGATTTGCATA
                                            ||| ||      || |||  |         | | |  || |||    || |  | |      |   |    |||||  |||| |||| |   ||     | ||  ||   ||  ||    ||| ||| |  |   |   ||| || |   | |||| |||||  | ||||| ||||| || ||||||||||| |||||||||||||| ||  ||||||| || 
-------------------------------------------gtgagaaag----gtttatactgcaacaactacgcggtttagttac--tgcaccaaatgcagttctgtg---ttgct--ttttttttttgaaagttt---agttctgtc--atctgtgtgttagATTGAACCCAACTGATATGTTGGAGAGGCTGAGGGGGAAGAGGCTGGTGTTTGTGGGTGATTCGCTCAACAGGAACATGTGGGAATCCCTGATTTGTATC

upper sequence: GLYMA03G30210.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G12060.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaaagtttttaacttcatgggtgtttatgtttttgtccaaaattgacaatattttgtctattttattttggtaatgtgaatttgttgtcttgtattatacttgaattgattcatttgctaattttctt-ttggggggtcccaaaatttggttgaattggtaatatagGTTGGATGCGCATCGAATGCTGCAATTGTTGAGAGGGAAACGACTGGTTTTTGTTGGCGATTCGCTCAATAGGAACATGTGGGAGTCTTTGATTTGCATA
                                                               | ||| |   | | ||  ||  || | ||  ||  |  |   | ||| |  |  |  | | |  |  |     | |   |   | ||  |||||   ||  | |||||  |||    |  | ||||  |  || | ||||| | | | || || |||||||| |||||||| ||||| |||||||||||||||||| ||||||| 
--------------------------------------------------------------gtaattataacact-tggtttcttttttttacatggtggt--gagtgactggtacgtgagtctaataatccaatgatataagtgtgtgtatgaat--atatgaaagGTTAAATGGAGGTAAATTGCTTGAGATGATTAGAGGAAGAAGGCTAGTGTTTGTTGGAGATTCGCTGAATAGAAACATGTGGGAGTCTTTGGTTTGCATT

upper sequence: GLYMA03G30210.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0007g06680.t01 (Vitis vinifera), 3'ss of exon 1
gtaaagtttttaacttcatgggtgtttatgtttttgtccaaaattgacaatattttgtctattttattttggtaatgtgaatttgttgtcttgtattatacttgaattgattcatttgctaattttcttttggggggtcccaaaatttggttgaattggtaatat--agGTTGGATGCGCATCGAATGCTGCAATTGTTGAGAGGGAAACGACTGGTTTTTGTTGGCGATTCGCTCAATAGGAACATGTGGGAGTCTTTGATTTGCATA
                                                                 ||  || |    || |||| || |  || |    |      | | || | || ||   ||| ||   | |         |||| | ||||||| |   ||  |||||| ||| |  ||  ||| || || ||||||| || ||  ||||||||||||| || ||||| ||||||||||| |||||||| ||| || ||||||||
-----------------------------------------------------------------atcctgttgtgttgtattt-ttataatgaaactgatccatctagtttaagttcctgggtttgttccagtgatgtt---gatttagatgaattgattgcattcagGTTGAATGGGAGTCATATGTTGGAACTGTTGAGGGGAAAGAGACTGGTTTTTGTGGGGGATTCTCTCAATAGGAATATGTGGGAATCTCTGGTTTGCATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttgctaattttcttttggggggtcccaaaatttggttgaattggtaatatagGTTGGATGCGCATCGAATGCTGCAATTGTTGAGAGGGAAACGACTGGTTTTTGTTGGCGATTCGCTCAATAGGAACATGTGGGAGTCTTTGATTTGCATA
    tgctaat  putative branch site (score: 2)
       taattttctttt  TA-rich tract