1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tttagcttgggattgggaacatggactttctcggccttgcctggatgattggatatgcattgttattttttttaacatgttgtcatgattttggtttcagGGCCATGGAAGCAACTAATGCTCATCCTTCCCGTATTTCTGAATTTGGAACCCTGGAGCAATCTCTTGGATTTCGTGTTGAAGATACCATTAATCTTAGC
species | Glycine max |
transcript | GLYMA03G28320.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCTTCCAATTCCAT GGCCATGGAAGCAACTAATGCTCATCCTTCCCGTATTTCTGAATTTGGAACEST: gi|120530210|gb|EH258344.1|EH258344
genomic: AACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCTTCCAATTCCATgtaaactttt ... ttggtttcagGGCCATGGAAGCAACTAATGCTCATCCTTCCCGTATTTCTGAATTTGGAAC
EST: AACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCTTCCAATTCCAT GGCCATGGAAGCAACTAATGCTCATCCTTCCCGTATTTCTGAATTTGGAACEST: gi|208156661|gb|GD955011.1|GD955011
genomic: AACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCTTCCAATTCCATgtaaactttt ... ttggtttcagGGCCATGGAAGCAACTAATGCTCATCCTTCCCGTATTTCTGAATTTGGAAC
EST: AACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCTTCCAATTCCAT GGCCATGGAAGCAACTAATGCTCATCCTTCCCGTATTTCTGAATTTGGAAC
genomic: AACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCTTCCAATTCCATgtaaactttt ... ttggtttcagGGCCATGGAAGCAACTAATGCTCATCCTTCCCGTATTTCTGAATTTGGAAC
tgattggatatgcattgttattttttttaacatgttgtcatgattttggtttcagGGCCATGGAAGCAACTAATGCTCATCCTTCCCGTATTTCTGAATTTGGAACCCTGGAGCAATCTCTTGGATTTCGTGTTGAAGATACCATTAATCTTAGC
ttttaac putative branch site (score: 2)
atatgcattgttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttagcttgggattgggaacatggactttctcggccttgcctggatgattggatatgcattgttattttttttaacatgttgtcatgattttggtttcagGGCCATGGAAGCAACTAATGCTCATCCTTCCCGTATTTCTGAATTTGGAACCCTGGAGCAATCTCTTGGATTTCGTGTTGAAGATACCATTAATCTTAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - gggattg
- - - - - - - - - -catggac
- - - - - - - - - - - - - - - - - ccttgcc
- - - - - - - - - - - - - - - - - - - - -tggatga
- - - - - - - - - - - - - - - - - - - - - - - - - -gatatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtc