1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttagtagttttcttgctctagaaaacggtgttcattatccaaaaaacatgttctaaaatttgttttttttttctgttatgttgttatagGCCTGTGATTGATCAGAACTTATATTATGCGGGGTTGAAATTTACTTCCCCTACCTACTCATGTGCGATAAGCAACATGCTCCCTGCTATGACATTTGTG
species | Glycine max |
transcript | GLYMA03G27760.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGATTACATTTCTCATGTTCATGCAAATATTCGTGTTGGGTCTCCTTGG GCCTGTGATTGATCAGAACTTATATTATGCGGGGTTGAAATTTACTTCCCCEST: gi|213597584|gb|DB962550.1|DB962550
genomic: AAGATTACATTTCTCATGTTCATGCAAATATTCGTGTTGGGTCTCCTTGGgttagtagtt ... gttgttatagGCCTGTGATTGATCAGAACTTATATTATGCGGGGTTGAAATTTACTTCCCC
EST: AAGATTACATTTCTCATGTTCATGCAAATATTCGTGTTGGGTCTCCTTGG GCCTGTGATTGATCAGAACTTATATTATGCGGGGTTGAAATTTACTTCCCCEST: gi|23726100|gb|BU761030.1|BU761030
genomic: AAGATTACATTTCTCATGTTCATGCAAATATTCGTGTTGGGTCTCCTTGGgttagtagtt ... gttgttatagGCCTGTGATTGATCAGAACTTATATTATGCGGGGTTGAAATTTACTTCCCC
EST: AAGATTACATTTCTCATGTTCATGCAAATATTCGTGTTGGGTCTCCTTGG GCCTGTGATTGATCAGAACTTATATTATGCGGNGTTGAAATTTACTTCCCCEST: gi|151401707|gb|EV271520.1|EV271520
genomic: AAGATTACATTTCTCATGTTCATGCAAATATTCGTGTTGGGTCTCCTTGGgttagtagtt ... gttgttatagGCCTGTGATTGATCAGAACTTATATTATGCGGGGTTGAAATTTACTTCCCC
EST: AAGATTACATTTCTCATGTTCATGCAAATATTCGTGTTGGGTCTCCTTGG GCCTGTGATTGATCAGAACTTATATTATGCGGGGTTGAAATTTACTTCCCCEST: gi|213617303|gb|DB972913.1|DB972913
genomic: AAGATTACATTTCTCATGTTCATGCAAATATTCGTGTTGGGTCTCCTTGGgttagtagtt ... gttgttatagGCCTGTGATTGATCAGAACTTATATTATGCGGGGTTGAAATTTACTTCCCC
EST: AAGATTACATTTCTCATGTTCATGCAAATATTCGTGTTGGGTCTCCTTGG GCCTGTGATTGATCAGAACTTATATTATGCGGGGTTGAAATTTACTTCCCCEST: gi|254320171|gb|GR829359.1|GR829359
genomic: AAGATTACATTTCTCATGTTCATGCAAATATTCGTGTTGGGTCTCCTTGGgttagtagtt ... gttgttatagGCCTGTGATTGATCAGAACTTATATTATGCGGGGTTGAAATTTACTTCCCC
EST: AAGATTACATTTCTCATGTTCATGCAAATATTCGTGTTGGGTCTCCTTGG GCCTGTGATTGATCAGAACTTATATTATGCGGGGTTGAAATTTACTTCCCC
genomic: AAGATTACATTTCTCATGTTCATGCAAATATTCGTGTTGGGTCTCCTTGGgttagtagtt ... gttgttatagGCCTGTGATTGATCAGAACTTATATTATGCGGGGTTGAAATTTACTTCCCC
ttatccaaaaaacatgttctaaaatttgttttttttttctgttatgttgttatagGCCTGTGATTGATCAGAACTTATATTATGCGGGGTTGAAATTTACTTCCCCTACCTACTCATGTGCGATAAGCAACATGCTCCCTGCTATGACATTTGTG
ttctaaa putative branch site (score: 2)
taaaatttgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtagttttcttgctctagaaaacggtgttcattatccaaaaaacatgttctaaaatttgttttttttttctgttatgttgttatagGCCTGTGATTGATCAGAACTTATATTATGCGGGGTTGAAATTTACTTCCCCTACCTACTCATGTGCGATAAGCAACATGCTCCCTGCTATGACATTTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA