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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgagtttattttattttattttgtcactctttattcaacaatatatgtttaaattgttgaatatacgatgtttaatcattgaatctcattttcaccataattattgtagCTAAAATGTGGTGTTATTGTCGATTGGTATATATGCCTATGTCTTACTTATATGGGAAAAGGTTTGTGGGTCCAATCACACCACTCATCTTACAATTGAG

Basic information

species Glycine max
transcript GLYMA03G27620.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G27620.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 9
gttgagtttattttattttattttgtcactctttattcaacaatatatgtttaaattgttgaatatacgatgtttaatcattgaatctcatt-ttcaccataattattgtagCTAAAATGTGGTGTTATTGTCGATTGGTATATATGCCTATGTCTTACTTATATGGGAAAAGGTTTGTGGGTCCAATCACACCACTCATCTTACAATTGAG
     |||||||   | |||     | ||  ||       | |  |  || ||  |  || | | | | ||  ||  ||   |  |||  |  ||       || | || ||| ||||||||||| || ||||| ||||| || ||||| ||||| ||||||||||| ||| | ||||| || ||||||||||| ||  |  || || ||||
-----gtttatta-gtcttaagaaatgaca-ttcccatgtctactttcgtctagct--ttcattttcccatcgttggtcga-gcttcttgtaatttgagtccataaatgcagCAAAAATGTGGTGCTACTGTCGGTTGGTTTACATGCCCATGTCATACTTATATGGTAAACGATTTGTTGGCCCAATCACACCTCTTGTTCTAGAACTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgaatatacgatgtttaatcattgaatctcattttcaccataattattgtagCTAAAATGTGGTGTTATTGTCGATTGGTATATATGCCTATGTCTTACTTATATGGGAAAAGGTTTGTGGGTCCAATCACACCACTCATCTTACAATTGAG
               gtttaat  putative branch site (score: 4)
                tttaatcattgaat  TA-rich tract