Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttattcacttgctaactttttatgttgagaaactgccaagttttctctaagctcttgcttttttctgttttaatactaaacatctgattcatatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAAGAACTGTATGACCAGTATGGTGAAGATGCCCTTAAAGAAGGGATGGGGG

Basic information

species Glycine max
transcript GLYMA03G27030.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G27030.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G118731_T01 (Zea mays), 3'ss of exon 2
gttattcacttgctaactttttatgttgagaaactgccaagttttctctaagctcttgcttttttctgttttaatactaaacatctgattcatatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAAGAACTGTATGACCAGTATGGTGAAGATGCCCTTAAAGAAGGGATGGGGG
    ||   |   |     ||| |  ||  | | |  |    | | |  ||  | | | | || ||      |    |       ||||  |  |  |||||||| ||| |   |||||| ||||| ||| | ||||| || |||||||  ||  | |||||||||||||| |||||||||||||| ||||| ||||| |
---gtttgttctgtccacatttgttctgtaatattagcttagtatgtgcaa-ttgtaggtgttctcatcgccaggttttccttgatgatgaacttggcagTTTAAAGAGCTGTCTCAAGCTTATGATGTTCTTAGTGACCCGGAGAAGAGGGAGATCTATGACCAGTATGGAGAAGATGCCCTTAAGGAAGGAATGGGAG

upper sequence: GLYMA03G27030.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S174_37V6.1 (Physcomitrella patens), 3'ss of exon 1
---------------------------------------------------------------gttattcacttgctaactttttatgttgagaaactgccaagttttctctaagctcttgcttttttctgtttta-atac-taaacatctgattcatatat----cagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAAGAACTGTATGACCAGTATGGTGAAGATGCCCTTAAAGAAGGGATGGGGG
                                                                 ||||     | |  |  || | |  ||||   |||   ||    ||   | ||| | || |   | |  || |||| |    |  ||| | || | |    ||||| || ||| |    ||||| || ||||||||||| || || ||||||  |||||||||||| |||||||| ||||| || || || ||||| ||||| |
gtacgttggtgtttggatgggcgttgctctgtagtttgtcagtgagccacgtgcggaatgcttaatattttgaagttggcacttcaag--gagatcgtgctttgtggagtcggtgttctcgtttgtaaatatcatatatacctgcttacttgagtgatctttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAGAACTGTATGATCAGTATGGAGAAGACGCTCTCAAGGAAGGAATGGGTG

upper sequence: GLYMA03G27030.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S17_208V6.1 (Physcomitrella patens), 3'ss of exon 1
---gttattcacttgc-taactttttatgttgagaaactgccaagttttctctaagctcttgcttttttctgttttaatactaaacatctgattcatatat-cagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAAGAACTGTATGACCAGTATGGTGAAGATGCCCTTAAAGAAGGGATGGGGG
    | |  |  |||   ||  || | |  |  |  |||   | | | |   | ||    || |||  | |   |   ||||||    ||||    ||||| ||||| || ||| | | ||| || || |||||| |||||||||| ||||||   ||| | || || ||||||||||||||||| || |||||||| ||||| |
aacctaaggcgattgtgcaatcttctgtacttggtgacttgaagggtct---tgagtatgtgatttagtttaaat--gtactaaggcgctgacgtctatatgcagTTCAAAGAGCTTGCTCAGGCTTACGAAGTTCTAAGTGATCCGGAGAAGCGTGAAATATACGATCAGTATGGTGAAGATGCTCTCAAAGAAGGAATGGGTG

upper sequence: GLYMA03G27030.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S342_16V6.2 (Physcomitrella patens), 3'ss of exon 1
gttattcacttgct---aactttttatgttgagaaactgccaagttttctctaagctcttgcttttttctgttttaatactaaacatctgattcatatat-cagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAAGAACTGTATGACCAGTATGGTGAAGATGCCCTTAAAGAAGGGATGGGGG
  | |  || ||     ||  |  | |  || |  |      ||       | | ||   | |||  |    |  |   || |     | ||  ||   | |||||||||||  | | ||| || || |||||||| |||||||||||||||   ||  | ||||| || |||||||||||||| ||||||||||| ||||| |
--tgtagacatggctgcaagctcgtgtactgtggtatgagagagggact--tgaacttgggatttaattctctggagggctgagacgtttatgtatgcttgcagTTTAAGGAACTTGCTCAGGCTTACGAAGTTTTGAGTGATCCTGAGAAGCGTGATATATATGATCAATATGGTGAAGATGCACTTAAAGAAGGAATGGGTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209717740|gb|BW654028.1|BW654028
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|24135816|gb|BU926326.1|BU926326
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|18040422|gb|BM308716.1|BM308716
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|193576866|gb|FK535123.1|FK535123
EST:     AGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: AGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|24136970|gb|BU927480.1|BU927480
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|209707884|gb|BW657002.1|BW657002
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|254335361|gb|GR846858.1|GR846858
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|254319865|gb|GR830889.1|GR830889
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|11687383|gb|BF595059.1|BF595059
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|11412106|gb|BF424117.1|BF424117
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|42722495|gb|CK768394.1|CK768394
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|254331143|gb|GR843262.1|GR843262
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|254348976|gb|GR860248.1|GR860248
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|14258951|gb|BG881859.1|BG881859
EST:     GAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|23727038|gb|BU761533.1|BU761533
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|13791552|gb|BG654143.1|BG654143
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCATTTTTATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|19453462|gb|BM954872.1|BM954872
EST:     AACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: AACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|7685781|gb|AW756429.1|AW756429
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|7233109|gb|AW568459.1|AW568459
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|213599223|gb|DB962274.1|DB962274
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|18690716|gb|BM519564.1|BM519564
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|16997284|gb|BM086656.1|BM086656
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|5606035|gb|AI900133.1|AI900133
EST:     AAAGGCGGCTATGAAGAACCATCCAGATANAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: AAAGGCGGCTATGAAGAACCATCCAGATA-AGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|15201211|gb|BI424752.1|BI424752
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|23727594|gb|BU761832.1|BU761832
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|192331510|gb|FK023415.1|FK023415
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|16996576|gb|BM085948.1|BM085948
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|19453406|gb|BM954816.1|BM954816
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|254347759|gb|GR854008.1|GR854008
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|192309090|gb|FG999051.1|FG999051
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|254321258|gb|GR827707.1|GR827707
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|11412310|gb|BF424321.1|BF424321
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|213596853|gb|DB958061.1|DB958061
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|7233167|gb|AW568516.1|AW568516
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|7589650|gb|AW705420.1|AW705420
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|18040608|gb|BM308902.1|BM308902
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|254319441|gb|GR830692.1|GR830692
EST:     GAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|254328558|gb|GR832930.1|GR832930
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|7589082|gb|AW704864.1|AW704864
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctaagctcttgcttttttctgttttaatactaaacatctgattcatatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAAGAACTGTATGACCAGTATGGTGAAGATGCCCTTAAAGAAGGGATGGGGG
              ttttttctgttttaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttattcacttgctaactttttatgttgagaaactgccaagttttctctaagctcttgcttttttctgttttaatactaaacatctgattcatatatcagTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAAGAACTGTATGACCAGTATGGTGAAGATGCCCTTAAAGAAGGGATGGGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - cacttgc
- - - - - - - - - - - -tgttgag
- - - - - - - - - - - - - - - - -ctgccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catctga