1 5' 3' | 2 5' 3' | 3 5' 3' |
...actagcaaagactattctttttgttacatgtataattgtagtaatgaagttttgtaatttgttgttaacttgatattatctgttttctattttcggacagTCGGCACACTGGCTTGTGGTGCACAGAGCTATAATGGCTATAAAAGATGTGGATGGGATGCTTTCTTCCTTGGATCCTGAGTACTATGATATCCTAATGA
species | Glycine max |
transcript | GLYMA03G26690.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAACTGCCCTTGAAGGCACATTTGCCATCATTGGGGATGAGCGTTGCAAG TCGGCACACTGGCTTGTGGTGCACAGAGCTATAATGGCTATAAAAGATGTGEST: gi|10235705|gb|BE804593.1|BE804593
genomic: AAACTGCCCTTGAAGGCACATTTGCCATCATTGGGGATGAGCGTTGCAAGgttttttccc ... tttcggacagTCGGCACACTGGCTTGTGGTGCACAGAGCTATAATGGCTATAAAAGATGTG
EST: AAACTGCCCTTGAAGGCACATTTGCCATCATTGGGGATGAGCGTTGCAAG TCGGCACACTGGCTTGTGGTGCACAGAGCTATAATGGCTATAAAAGATGTG
genomic: AAACTGCCCTTGAAGGCACATTTGCCATCATTGGGGATGAGCGTTGCAAGgttttttccc ... tttcggacagTCGGCACACTGGCTTGTGGTGCACAGAGCTATAATGGCTATAAAAGATGTG
gaagttttgtaatttgttgttaacttgatattatctgttttctattttcggacagTCGGCACACTGGCTTGTGGTGCACAGAGCTATAATGGCTATAAAAGATGTGGATGGGATGCTTTCTTCCTTGGATCCTGAGTACTATGATATCCTAATGA
tctgttttctattttc CT-rich tract
atattatctgttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actagcaaagactattctttttgttacatgtataattgtagtaatgaagttttgtaatttgttgttaacttgatattatctgttttctattttcggacagTCGGCACACTGGCTTGTGGTGCACAGAGCTATAATGGCTATAAAAGATGTGGATGGGATGCTTTCTTCCTTGGATCCTGAGTACTATGATATCCTAATGA
- - - - - - - - - - - - - catgtat
- - - - - - - - - - - - - - - - - - - - - aatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtt